Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01906 ATGTCTGCTGCTGTTTCCGCAACCAAGGATGTTCCCTTCAATTCTCAGTTGGAGGAAGACCTTAAAAACAAAGGAACCAATAACAAGGTTGTTGGGGAAGCAGACCGTGTTCCTTACACTGAGGATGCGGAAGGAACTGAGTCAGAGGCAGAGGAAGACCCCAAGTTGAAATTGGATCTTGGCCCTCGGTTTTCCCTCAAAGAACAGATTGAGAAAGACAATGATGATGAAAGTTTGAGGAAATGGAAGGAACAGCTTCTGGGAAGTATTGATGTGTCTGCTGTTGGAGAGAACAAAGAGCCAGAAGTGAAGATAGTGAGCCTCACCATAATATGCCCAGGGAGGCCTGACCTGATTTTACCAATTCCATTTACTTATGATGCGAAGAAGAGTATCTTCATTCTCAAGGAAGGAAGTCAATACCGCTTGAAATTCTCCTTTTCTGTCTCCAACAACATTGTTTCCGGCCTCAAATACACCAATGTTGTTTGGAAAACTGGGGTTAGAGTGGACAACACCAAAAAAATGTTGGGAACTTACAGCCCAAGGCAGGATCCATATACATATGAATTGGAAGAAGAAACTACCCCGTCAGGGTTATTCGCTAGGGGAACCTATTCAGCAAGAACCAAGTTTGTAGATGATGATTGCAAATGCTACTTGGACGCAAGTTACTACTTTGAAATTCAGAAGAGTTGGCCTACACCCATTTAA 714 0.4328 MSAAVSATKDVPFNSQLEEDLKNKGTNNKVVGEADRVPYTEDAEGTESEAEEDPKLKLDLGPRFSLKEQIEKDNDDESLRKWKEQLLGSIDVSAVGENKEPEVKIVSLTIICPGRPDLILPIPFTYDAKKSIFILKEGSQYRLKFSFSVSNNIVSGLKYTNVVWKTGVRVDNTKKMLGTYSPRQDPYTYELEEETTPSGLFARGTYSARTKFVDDDCKCYLDASYYFEIQKSWPTPI 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01906 237 Pfam RHO protein GDP dissociation inhibitor 46 231 IPR000406 GO:0005094|GO:0005515|GO:0005737|GO:0007266
Vimu11g01906 237 Gene3D Coagulation Factor XIII, subunit A, domain 1 57 235 IPR024792 -
Vimu11g01906 237 PRINTS RHO protein GDP dissociation inhibitor signature 93 108 IPR000406 GO:0005094|GO:0005515|GO:0005737|GO:0007266
Vimu11g01906 237 PRINTS RHO protein GDP dissociation inhibitor signature 153 169 IPR000406 GO:0005094|GO:0005515|GO:0005737|GO:0007266
Vimu11g01906 237 PRINTS RHO protein GDP dissociation inhibitor signature 170 185 IPR000406 GO:0005094|GO:0005515|GO:0005737|GO:0007266
Vimu11g01906 237 PRINTS RHO protein GDP dissociation inhibitor signature 212 229 IPR000406 GO:0005094|GO:0005515|GO:0005737|GO:0007266
Vimu11g01906 237 SUPERFAMILY E set domains 44 234 IPR014756 -
Vimu11g01906 237 FunFam Rho GDP-dissociation inhibitor 1 56 235 - -
Vimu11g01906 237 PANTHER RHO GDP-DISSOCIATION INHIBITOR 45 234 IPR000406 GO:0005094|GO:0005515|GO:0005737|GO:0007266
Vimu11g01906 237 MobiDBLite consensus disorder prediction 1 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01906 Vimu-Chr11 28561284 28562617 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01906 K12462 - gmx:100806852 410.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01482 6 14105917 14107698 Vimu11g01906 11 28561284 28562617 PCT