Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01886 ATGGATCCAGACAATTTGGCAAAGGCATTCGTAGATCACTACTACAGCACCTTCGACAACAACCGCCAAAGCCTGGCCGGTCTCTACCAGGATGCTTCCATGCTCACTTTTGAAGGCCAGAAGATCCAGGGCGCTTCCAACATCGTCGCCAAGCTCACTTCCCTCCCTTTTCAGCAGTGCCACCACTCCATCTCCACCGTCGACTGCCAACCTTCCGGTGCCAGCGGCGGCATGCTCGTCTTCGTCAGCGGCAGCCTCCAGCTCGCCGGCGAACAACACACTCTCAAATTCAGCCAGGTCAACAACACTCTCTCTGTCTTAGGGTTCTCTTCACACTCCGATCCATCATCCATTTCCGCTTCGATCTGA 369 0.5501 MDPDNLAKAFVDHYYSTFDNNRQSLAGLYQDASMLTFEGQKIQGASNIVAKLTSLPFQQCHHSISTVDCQPSGASGGMLVFVSGSLQLAGEQHTLKFSQVNNTLSVLGFSSHSDPSSISASI 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01886 122 Pfam Nuclear transport factor 2 (NTF2) domain 7 100 IPR002075 -
Vimu11g01886 122 Gene3D - 1 104 - -
Vimu11g01886 122 ProSiteProfiles Nuclear transport factor 2 domain profile. 6 100 IPR018222 -
Vimu11g01886 122 SUPERFAMILY NTF2-like 3 100 IPR032710 -
Vimu11g01886 122 CDD NTF2 2 100 IPR018222 -
Vimu11g01886 122 PANTHER NUCLEAR TRANSPORT FACTOR 2 2 100 IPR045875 GO:0006913
Vimu11g01886 122 FunFam Nuclear transport factor 2 1 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01886 Vimu-Chr11 27410433 27410801 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01886 - - gmx:100777334 180.644
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g01886 11 27410433 27410801 Vimu11g01886 11 27410433 27410801 ECH
Vimu6g01491 6 14185637 14186641 Vimu11g01886 11 27410433 27410801 PCT