Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01880 ATGCAAGGGAGCGAGAGGATGAAGAACAGATGGTTCATGTGGCTATTGGGGACATTGTGCATAATCGGAGTCACACTCTTCATCGCCAGTTTCATGCAAACCTCTGAGAACAGTCTTCTATGCTCAATAACCAGAGCGCGGCAGCAGTTAACCGGACCTACCACATCGATGCAGCTAAGAGCGATACTTCACTACGCCACCTCGCAGATTGTGCCGCAACAGTCTCTTTCGGAAATCACCGTCACCTTCGACGTGCTCCAGGCCCTTAATCGGCCTGCCAATTTTCTCGTCTTTGGGCTGGGCCACGACTCCCTCATGTGGGCCGGTCTCAACGCAGGCGGCACCACGCTCTTCCTCGAGGAGGACCCTAAGTGGGTCCAGACCGTCCTCAAGGACGCGCCGTTCCTCCGGGCTCACACCGTCAACTACCGAACCCAGCTCCGCGAAGCCGACCAGCTCCTCTCGTCTTACCGCTCCGAGCCCGCCTGCTCGCCGGCCACCGCCACGCTTCGCGGCAACGAGCGGTGCAAGCTGGCGCTCCAGAACCTCCCAGACGAGGTGTACTCAACGGAGTGGGATCTGATCATGATTGACGCACCAAAGGGGTACTTCGCGGAGGCGCCAGGACGCATGGCAGCGATCTTCTCGGCGGCGGTGATGGCGAGGGACAGAAAGGGCTCCGGCGTAACGCACGTATTCCTGCACGATGTAGATCGGAAAGTAGAAAAGGTTTATGCGGAGGAGTTTCTCTGCCGGAAGCAGTTGGTAAAAGGCGTTGGCAGGCTCTGGCACTTCGAGATTCCTCCCAGGGCTAATCACTCTCGTGATGACGAGCGTTTCTGTTAG 846 0.5792 MQGSERMKNRWFMWLLGTLCIIGVTLFIASFMQTSENSLLCSITRARQQLTGPTTSMQLRAILHYATSQIVPQQSLSEITVTFDVLQALNRPANFLVFGLGHDSLMWAGLNAGGTTLFLEEDPKWVQTVLKDAPFLRAHTVNYRTQLREADQLLSSYRSEPACSPATATLRGNERCKLALQNLPDEVYSTEWDLIMIDAPKGYFAEAPGRMAAIFSAAVMARDRKGSGVTHVFLHDVDRKVEKVYAEEFLCRKQLVKGVGRLWHFEIPPRANHSRDDERFC 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01880 281 Gene3D Vaccinia Virus protein VP39 73 278 IPR029063 -
Vimu11g01880 281 NCBIfam TIGR01627 domain 60 281 IPR006514 GO:0045492
Vimu11g01880 281 PANTHER OS11G0490100 PROTEIN 15 281 IPR006514 GO:0045492
Vimu11g01880 281 Pfam Polysaccharide biosynthesis 78 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01880 Vimu-Chr11 27175669 27178224 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01880 - - pvu:PHAVU_002G173400g 530.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g01880 11 27175669 27178224 Vimu11g01880 11 27175669 27178224 ECH
Vimu6g01504 6 14220206 14221781 Vimu11g01880 11 27175669 27178224 PCT