Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01854 ATGCCTGGTTTTGTGGCTGAAAAGAAGAGATATACAGACCCAAATATGTGTTTTCCCAATTTGGACAACCATGATAAACCAACCCCTACAAAAAGCAATCGTTGTGTGAGGTCTGAGGCTGTAGATGATGATGAAGATTGTAGTAGCCCCATTTTACCTGGGCTTCCTGATGATGTTTCAAAGCACTGCCTTGCACTTGTGCCTCGTTCTAACTTCCCATCCATGGGCGGTGTAAATAAGAGATGGAGAGGCTTTATTCAAAGCAAAGAATTTATAACCGTGCGAAAATTGGCTGGGATGGACGAGGAATGGCTCTATATCTTAACAGCTGGTAGTAAAGGAAAAGGGAGCCATTGGGAGGTCATGGATTGTCTGGGACATAATCGCCGATCTCTTCCATCAATGCCTGGTCCAGCAAAGGCTGGCTTTGGAGTGGTGGTTCTCAATGGAAAGCTCCTTGTTATGGCTGGTTGTTCATCAGTTGATGGAACTGCATCTGTCTCAGAAGAGGTTTATCAATATGATTCTTGCCTCAACAGGTATGCTTTTGTGCTGTAA 558 0.4427 MPGFVAEKKRYTDPNMCFPNLDNHDKPTPTKSNRCVRSEAVDDDEDCSSPILPGLPDDVSKHCLALVPRSNFPSMGGVNKRWRGFIQSKEFITVRKLAGMDEEWLYILTAGSKGKGSHWEVMDCLGHNRRSLPSMPGPAKAGFGVVVLNGKLLVMAGCSSVDGTASVSEEVYQYDSCLNRYAFVL 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01854 185 Gene3D - 31 182 IPR015915 GO:0005515
Vimu11g01854 185 Pfam Kelch motif 141 178 IPR006652 GO:0005515
Vimu11g01854 185 SUPERFAMILY Kelch motif 102 180 IPR015915 GO:0005515
Vimu11g01854 185 PANTHER OS02G0202900 PROTEIN 9 181 IPR045887 -
Vimu11g01854 185 CDD F-box_AtAFR-like 51 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01854 Vimu-Chr11 26046989 26047546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01854 55 168 Miscellaneous Gene Families AT4G33900 29.752 4.70e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01854 - - gmx:100815474 323.553
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g01854 11 26046989 26047546 Vimu11g01854 11 26046989 26047546 ECH
Vimu6g01521 6 14337748 14338356 Vimu11g01854 11 26046989 26047546 PCT