Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00984 ATGTCGGTGGTTCTGAGAAAAAGACTAGGTTGCTGCACGAAGGAAACCAAGATCAGCATTGATTTTGATGCGCCAGAGAGTGTTGTGACATATAATGGCCTTGAGAGTTTACCTTCGGATAATCGTTCTTGCGGAGGTGAAAGCATAACGAGTAGAGGAGATGGATGTATAACTGATTCATTTAATGATGATGACTCCAGTTGTTGTTCATCCAGTAAAGATGCTTTTGGATCATTCTCTTCAAAATGTTTGACCATGAAAAGAGATGAACAAGGATTGGAAGAGTGGGAACTCCCAGAAAGCCCTCCAAATTTTTATCTTAAGCACAAGTCTGCCTTTGACGTTCAAAGTTCAGATGTAGAAGCCATGAAGGAGAAGTTTGCAAAGCTTTTGCTTGGTGGAGATATTACAGGAGGATCAAAAGGTCTCAACACAGCTTTAGCACTGTCTACTGCTATCACAAGCCTTGCAGTGACGGTTTTTGGTGAGTTGTGGAAATTGGAACCACTGTCTGAAGAAAGGAAGAGCAAATGGCAAAGAGAAATGGGATGGTTGTTGTTACCTACTAACTATATGGTTGAGTTAGTTCCTGCTAAGCAAAATGGTGCCAATGGTGGGATCTTTGAGATAATGACCCCAAAAGGCCGTGCAGACATTCAAATGAATCTTCCAGCACTTCAGAAACTGGACTCAATGCTTATTGAGACACTAGACTCGATGGTGAATACCGAGTTTTGGTATGCGGAGGAAGGAAGCCGGTCAGAAGGGAGGAACACAATTGGAAGACAGAGCAAAAGATGGTGGCTTCCATCACCACGAGTACCAAGAACTGGACTTTCTGAAGTTGAAAGAAAAAGGCTGCTTCATCAGGGAAGGATAGTTCATCAAATATTCAAGGCTGCCAAATCAATCAATGATAACATGTTGCTTGAGATACCCGTGCCATCAGTGATTAAGGATGCACTTCTGAAGAGTGGAAAGGCAAGCCTGGGAGAGGAACTGCACAAGGTTTTGATGGCTGAATCGATTTTTGGAGAAGAAATGCTTAAAGCTCTCAATTTGAAATCTGAACATGCTATCCTAGAGACCATTAATAAACTGGAAGCAGCTACATTTTCATGGAAAGAAAGAATCATACAGGAAAGTAATGGCAAATCTCCGATTCGAACCTCATGGTCCTTCCTGAAGGACCCTGTGTCAGGTATAGAGAAGATGGAACTACTGTTGGAACGTGCAGAAAAACTTCTAAATCTTCTTAAAACCAGACATCCAAACCTTCCTCAAACATTTCTTGATGCTGCAAAAGTTCAATATGGCAAGGATATTGGGCATTCCATATTGGAAGCATACTCTAGAGTTCTTGGAAGTTTAGCATTTAGCATACTGTCTAGAATAGGAGACATATTGCAGGAGGATGCTTTCAGCAATCCCAATTCACCTATCTCAATAAGTCACTCTCCTGGGACAAATCTCTCTGAAGCTTGGGTGGTTGGTTCAAGTATAAGATACTCTTTAACAGACAAGATGAATGAGGCAGAAGGACAGCATGGTCGTTCCAGTTGTGGCAGTACTTCTGACATAGAACTCCCACCTACTGAGGCCAGTGCCAATATTATAACTGCCACTCCAAGCCGTGGTCGATTGTGGTGCATGGGTAGAAACTTGTAA 1668 0.4227 MSVVLRKRLGCCTKETKISIDFDAPESVVTYNGLESLPSDNRSCGGESITSRGDGCITDSFNDDDSSCCSSSKDAFGSFSSKCLTMKRDEQGLEEWELPESPPNFYLKHKSAFDVQSSDVEAMKEKFAKLLLGGDITGGSKGLNTALALSTAITSLAVTVFGELWKLEPLSEERKSKWQREMGWLLLPTNYMVELVPAKQNGANGGIFEIMTPKGRADIQMNLPALQKLDSMLIETLDSMVNTEFWYAEEGSRSEGRNTIGRQSKRWWLPSPRVPRTGLSEVERKRLLHQGRIVHQIFKAAKSINDNMLLEIPVPSVIKDALLKSGKASLGEELHKVLMAESIFGEEMLKALNLKSEHAILETINKLEAATFSWKERIIQESNGKSPIRTSWSFLKDPVSGIEKMELLLERAEKLLNLLKTRHPNLPQTFLDAAKVQYGKDIGHSILEAYSRVLGSLAFSILSRIGDILQEDAFSNPNSPISISHSPGTNLSEAWVVGSSIRYSLTDKMNEAEGQHGRSSCGSTSDIELPPTEASANIITATPSRGRLWCMGRNL 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00984 555 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 1 31 492 IPR038937 GO:0005085
Vimu11g00984 555 FunFam Rop guanine nucleotide exchange factor 14 345 481 - -
Vimu11g00984 555 FunFam Rop guanine nucleotide exchange factor 14 112 343 - -
Vimu11g00984 555 ProSiteProfiles PRONE domain profile. 110 482 IPR005512 GO:0005085
Vimu11g00984 555 Pfam PRONE (Plant-specific Rop nucleotide exchanger) 118 475 IPR005512 GO:0005085
Vimu11g00984 555 Coils Coil 402 422 - -
Vimu11g00984 555 Gene3D PRONE domain, subdomain 1 112 348 - -
Vimu11g00984 555 Gene3D PRONE domain, subdomain 1 349 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00984 Vimu-Chr11 10245579 10252048 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00984 - - var:108332640 1023.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g00984 11 10245579 10252048 Vimu11g00984 11 10245579 10252048 ECH
Vimu7g03278 7 27834676 27841480 Vimu11g00984 11 10245579 10252048 PCT