Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00977 ATGGCCCTCACCACCAAGTCCAGAAAACCCAATTCACCTTCAAACTTTTACTTTTGCACCACTCTTTTCTTCGTTGTCCTCTTCACTATACCACTTCTTTTCCTCCTCCATACCCCAACCACCACCTCCTTATGCACCACCCAAACTAAAACTTGGTCCGGTGATCTTCAGTTGGCTGAATTTGCATGGAACCGCCTCTCATTTTCTGAGCGCAACACACCACCCTCTGCTCTCAAAATTGCTGTCTTCTCCAGGAAGTGGCCTATTGGCACAACCCCTGGTGGCATGGAACGCCATGCTCACACCCTTCATACTGCTTTAGCACGCCTTGGTCATCAAGTTCATGTCTTTACGTCTCCACCCCAAGATGAAAGCACTTCAATCTCATCCTCTGAAAAAGGTGCACCTTCTTCCCCTTACATTCATTTCCATGAAGGTGAGCCTGGGAGGTGGCGCTATAACAAGGCATGGGAGCAATTTGTGGAAGAAAACGGGAGAGAACCGTTTGATGTTGTGCACTCGGAAAGCGTGGCACTCCCACATTGGCTAGCACGCAACATGTCAAACCTTGCAGTGTCTTGGCATGGCATAGCCCTTGAGAGCTTGCAATCGAGTATTTTCCAGGACTTGGCTCGCCAGCCAGATGAGCCTATGTCCCCTTTTTTCAACAAAAGCATACAGGGTGTTGTGCCAAAGGTGCTGAATGAGATAAGGTTCTTCAGGAATTATGCGCATCATGTTGCTATTAGTGATAGCTGTGGTGAGATGCTCAGGGATGTGTACCAAATTCCTAACAGAAGAGTTCACGTGATTCTAAATGGTGTTGATGAGGATGACTTTAGAGAAGATGTAGAATTGGGAAGGGAATTCAGAAGAAAAATTGGCATTCCAGAGAATGCAAGTTTGGTACTTGGTGTTGCTGGAAGATTAGTGAAGGACAAAGGCCATCCTTTGCTTCATGAAGCTTATTCGAGGCTTATAACCAAGTACTCTAACGTTTACTTGATTGTAGCTGGTTCTGGACCATGGGAAAACAGGTACAGGGATCTCGGAAGCCAGGTTCTTGTTCTGGGATCGATGAGTCCTTCCATGTTAAGAGCTTTCTACAATGCAATTGACATTTTTGTTAATCCCACACTCAGACCACAAGGGCTTGACCTTACATTGATGGAGGCAATGATGAGTGGGAAACCTCTTTTGGCATCAAGATTTCCAAGCATTAAAGGGACTATTGTGGTTGATGATGAATATGGCTACATGTTTTCCCCCAATGTGGAGTCCCTGTTGGAGGCACTGGAAGCAGTGGTAAAGGAAGGACCCCAGAGGCTAGCAAAGAGGGGCAAGGCATGCCGGGAATATGCTGCCACAATGTTTACAGCAAGAAAGATGGCATTAGCATATGAGAGGTTATTCTTGTGTATAAAAAATCACACCTTCTGTTCCTATCCTTGA 1452 0.4594 MALTTKSRKPNSPSNFYFCTTLFFVVLFTIPLLFLLHTPTTTSLCTTQTKTWSGDLQLAEFAWNRLSFSERNTPPSALKIAVFSRKWPIGTTPGGMERHAHTLHTALARLGHQVHVFTSPPQDESTSISSSEKGAPSSPYIHFHEGEPGRWRYNKAWEQFVEENGREPFDVVHSESVALPHWLARNMSNLAVSWHGIALESLQSSIFQDLARQPDEPMSPFFNKSIQGVVPKVLNEIRFFRNYAHHVAISDSCGEMLRDVYQIPNRRVHVILNGVDEDDFREDVELGREFRRKIGIPENASLVLGVAGRLVKDKGHPLLHEAYSRLITKYSNVYLIVAGSGPWENRYRDLGSQVLVLGSMSPSMLRAFYNAIDIFVNPTLRPQGLDLTLMEAMMSGKPLLASRFPSIKGTIVVDDEYGYMFSPNVESLLEALEAVVKEGPQRLAKRGKACREYAATMFTARKMALAYERLFLCIKNHTFCSYP 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00977 483 Pfam Glycosyl transferases group 1 290 448 IPR001296 GO:0016757
Vimu11g00977 483 MobiDBLite consensus disorder prediction 120 140 - -
Vimu11g00977 483 Gene3D Glycogen Phosphorylase B; 284 454 - -
Vimu11g00977 483 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 79 471 - -
Vimu11g00977 483 Gene3D Glycogen Phosphorylase B; 78 283 - -
Vimu11g00977 483 MobiDBLite consensus disorder prediction 120 136 - -
Vimu11g00977 483 Pfam Glycosyltransferase Family 4 94 278 IPR028098 -
Vimu11g00977 483 CDD GT4_PimA-like 79 471 - -
Vimu11g00977 483 PANTHER GLYCOSYLTRANSFERASE 17 483 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00977 Vimu-Chr11 10138999 10140450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00977 1 483 Glycosyltransferase AT4G19460 66.333 0.0 667
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00977 - - gmx:100804436 859.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g00977 11 10138999 10140450 Vimu11g00977 11 10138999 10140450 ECH
Vimu7g03292 7 27947525 27948988 Vimu11g00977 11 10138999 10140450 PCT