Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00970 ATGGGGTGGTTCAATGGTGGTGAATATGCGCGTATTGAGGAGTTATCTTCCCCAAGGGAAAATCACACAAGGAAAATCTCTGTTCTTCCTCTAGTATTTCTCATCTTCTATGAGGTTTCTGGGGGACCCTTTGGGGTTGAGGACACTGTGCATGCAGCAGGTCCTCTATTAGCCCTTTTGGGGTTCTTGGTTTTTGCAGTCATATGGAGTGTTCCTGAGGCTCTAATTACTGCTGAGATGGGTACAATGTTTCCTGAGAACAGTGGTTATGTGGTTTGGGTCTCTTCTGCCCTGGGTCCCTTTTGGGGTTTTCAGCAAGGTTGGATGAAATGGCTAAGTGGGGTTATTGACAATGCTCTGTACCCAGTTCTATTTCTTGACTATTTGAAATCTGGAATCCCTGCATTGGGGAGTGGGGTTCCCAGAACTATTTCAACTTTAGGTGTTTTCTCACTCCTTCCTTTTGTGGTCATGGGATTCTTGTCAATTCCAGACTTGAAACCTTCAAGATGGTGTGTGGCAAATCTTGATGATACTGATTGGAATCTGTATTTGAATACTTTGTTCTGGAATCTCAATTATTGGGACTCTATTAGTACTCTTGCAGGAGAAGTGGAAAATCCAAGGAGAACTCTTCCCAGGGCTCTATTGTATGCTTTGATCCTTGTAGTTCTGGGATATTTCTTCCCTCTTTTGATTGGCACTGGTGCTGTTCCCCTCAACAGGGAGTTATGGACTGATGGGTACTTCTCAGAAATTGCTGAGATTGTTGGAGGAGTGTGGTTGAGGTGGTGGCTTCAGGCTGCTGCTGCAATGTCAAACATGGGAATGTTTGTTGCTGAAATGAGTAGTGACTCTTTCCAGCTTTTAGGAATGGCTGAGAGGGGCATGTTACCAGAGTTCTTTGGCAAGAGGTCTCGTTATGGAACTCCAATAATAGGAATACTGTTTTCTGCATCTGGTGTGATTTTACTCTCATGGCTGAGTTTTCAAGAGATTGTGGCTGCTGAAAATTTCTTGTACTGTTTTGGGATGATTTTGGAGTTTGTAGCATTCATATTGTTGAGGATGAAGCATCCAAACGCATCTAGACCTTACAAAATTCCTGGGGGAATAGCCGTAGCAGTTGCTATCTGCATTCCTCCCACAATTTTGATTTTTGTTGTGCTGGCTTTATCCACCAACAAAATACTGCTTATAAGCCTCATTGCCGTAGTGATAGGCCTTGTGATGCAACCTTGTCTCAAGATTCTGGAAGAAAGGGGATGGCTTATATTCTCAGTTAGGTATCAGCTCCTAAGCTGA 1305 0.4352 MGWFNGGEYARIEELSSPRENHTRKISVLPLVFLIFYEVSGGPFGVEDTVHAAGPLLALLGFLVFAVIWSVPEALITAEMGTMFPENSGYVVWVSSALGPFWGFQQGWMKWLSGVIDNALYPVLFLDYLKSGIPALGSGVPRTISTLGVFSLLPFVVMGFLSIPDLKPSRWCVANLDDTDWNLYLNTLFWNLNYWDSISTLAGEVENPRRTLPRALLYALILVVLGYFFPLLIGTGAVPLNRELWTDGYFSEIAEIVGGVWLRWWLQAAAAMSNMGMFVAEMSSDSFQLLGMAERGMLPEFFGKRSRYGTPIIGILFSASGVILLSWLSFQEIVAAENFLYCFGMILEFVAFILLRMKHPNASRPYKIPGGIAVAVAICIPPTILIFVVLALSTNKILLISLIAVVIGLVMQPCLKILEERGWLIFSVRYQLLS 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00970 434 PANTHER POLYAMINE TRANSPORTER PUT1 143 429 IPR044566 GO:0022857
Vimu11g00970 434 PIRSF AA_transporter 13 173 - -
Vimu11g00970 434 PIRSF AA_transporter 142 421 - -
Vimu11g00970 434 Gene3D Amino acid/polyamine transporter I 20 418 - -
Vimu11g00970 434 Pfam Amino acid permease 48 120 IPR004841 GO:0016020|GO:0055085
Vimu11g00970 434 Pfam Amino acid permease 146 408 IPR002293 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00970 Vimu-Chr11 10060303 10061679 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00970 13 432 Organic Solute Cotransporters AT1G31830 69.283 0.0 629
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00970 - - vra:106765956 846.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g00970 11 10060303 10061679 Vimu11g00970 11 10060303 10061679 ECH
Vimu7g03327 7 28211290 28214869 Vimu11g00970 11 10060303 10061679 PCT