Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03162 ATGGAGTATGAGTTGTTACACATTCACGACTCTATTGAGAGTGAAATGGCGGATTTGGTGTCGGTGGACATGGAAGCCATTTCTCCTCCACCCGAGATTAATGAGCTAGTCTTTTTGCAGGAACATGTTGTAAGAACTCGCTATGGTTGCGTCTCTGTTGCTGTGTATGGGGATCAGGACAAACCAGCGCTAATCACCTATCCTGATTTGGCTTTAAATTATGTTTCCTGCTTTCAAGGGTTGTTATTTTGTCCAGAAGCCTGTTCGCTACTGCTTCACAATTTCTGCATCTATCATATTAGTCCACCTGGGCATGAGTTGGGAGCTGCTACCATTGATCCAGACGGTCCAATTCTTTCTGCTGACGACTTAGCTGATCAAATAGCCGAAGTTCTTAATTATTTTGGTCAGAGTGCAGTGATGTGTATGGGAGTAACTGCTGGGGCTTACATTCTTGCCTTATTTGCTGTGAAATATAGACATCGTGTTCTTGGTTTGATACTTGTTTCCCCATTATGTAAAGCACCATCTTGGACTGAATGGCTGTACAATAAGGTCATGTCAAATTTACTCTACTTTTACGGCATGTGTGGGGTGGTTAAAGAAATATTGCTAAACCGATACTTTAGCAAGGAAGTTCGAGGCAGTGACTATTTGCCAGTGTCTGATATTGTTCAAGCATGCCAAAGGTCATTGGATGAGAGGCAGAGTTTGAATGTGTGGCGGTTCCTTGAAGCGATTAATGGGAGACATGACATCAGTGAAGGATTGAGAAAATTACATTGTCGTTCACTAATTTTTGTTGGGGATATGTCTCCTTTTCACTCTGAGGCTCTCCACATGGCATCTAAGTTGGATAGACGATTCAGTGCCTTAGTTGAAGTTCAAGCGTGTGGGTCAATGGTAACAGAGGAGCAACCTCATGCCATGTTAACACCGTTGGAGTACTTTCTCATGGGATATGGCTTGTACAGACCATCTAAGTTGAGTGTCAGCCCAAGAAGTCCCTTGAGTCCCACTTGCATTTCTCCTGAGCTTTACTCCCCGGAGAGCATGGGTTTGAAATTGAAACCAATAAAGACACGAATTTCAGTGGAGATGTAG 1104 0.433 MEYELLHIHDSIESEMADLVSVDMEAISPPPEINELVFLQEHVVRTRYGCVSVAVYGDQDKPALITYPDLALNYVSCFQGLLFCPEACSLLLHNFCIYHISPPGHELGAATIDPDGPILSADDLADQIAEVLNYFGQSAVMCMGVTAGAYILALFAVKYRHRVLGLILVSPLCKAPSWTEWLYNKVMSNLLYFYGMCGVVKEILLNRYFSKEVRGSDYLPVSDIVQACQRSLDERQSLNVWRFLEAINGRHDISEGLRKLHCRSLIFVGDMSPFHSEALHMASKLDRRFSALVEVQACGSMVTEEQPHAMLTPLEYFLMGYGLYRPSKLSVSPRSPLSPTCISPELYSPESMGLKLKPIKTRISVEM 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03162 367 Pfam Ndr family 41 325 IPR004142 -
Vimu10g03162 367 PANTHER N-MYC DOWNSTREAM REGULATED 35 361 IPR004142 -
Vimu10g03162 367 Gene3D alpha/beta hydrolase 34 320 IPR029058 -
Vimu10g03162 367 SUPERFAMILY alpha/beta-Hydrolases 52 318 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03162 Vimu-Chr10 42187202 42190813 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03162 - - var:108331933 696.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03162 10 42187202 42190813 Vimu10g03162 10 42187202 42190813 ECH
Vimu10g03162 10 42187202 42190813 Vimu1g02846 1 40753956 40758298 ECH
Vimu1g02846 1 40753956 40758298 Vimu10g03162 10 42187202 42190813 PCT