Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03026 ATGGAGGATGATAAAATAGTTGGATATGTTACCGCGTACCTGAAGAAGAAAGGTTTCACGCAAACAGAGAAGATTTTTCAGGAAGAGTTTCAGCAAAACAAAACCACCAATTCCTCCTCCAGTAATTCCCTTCTCGAACCCGACATTGCCAACCACCTCCTCGCATTCTCTCAATTGGAGAGTGGTCCGGCTAGGTTCCACGACGGCTACAGCAAACTGCGAACATGGACTTATTCTTCACTGGATTTGTACAAGCACGAGTTGCTTCGCGTGCTTTATCCCGTGTTTATCCACTGCTTTATGGACCTCGTGGCGAAAGGACATGTTCAGGAAGCTCGGAATTTCTTCAATACTTTCCGTGAAGACCACGAAATGATGCACTTGCGTGACCTTCAGAAGTTAGAAGGGGTTCTTTCTCCTACCCATCTGGAGGAAATGGAATTCGCTCACTCGCTTAGACAGAGCAAATTCAACATAAAGATATGTGAGGTTTTGTATGCTGGGCCATGGGGATTTGTGATACTAGTCAATTGCTTAATCTTATACACTGAAATTAATGTGTATAAGATTTTCATCATTTCATTTTATGTTGTGGACAAACTTATTGCAGACAGGAACATTTACAGTGGGATTTATGGTATGCCATTACTGTTGATTACCTTATCTTGGTGGATTTGGCTCATGCAAGGGCTTAATGGAGTTTCCCCTGGACAACCTAGCTTAATTTCTGATGATCCGGAAGCTGTTACCCTTACTGGAAGCAGCCAGGAAGCAGCAAACCGTATAAATCAAAAAGAAATTCATTGGGGGTTACTTGAAGATTCTCTTGAAGAACGGCTAGAGAAGGCAGGGGTCTTGCTTTCAGACTCGGAAAAGGGTGAAGGGGAAACAAAAGAGGGGGAGAATGACGAGACTAAGAAAAGATCCATTGAAGGAGGAAAGCAAGGTGGTTCAGTAAAAAAAGTAAAAAAGGACAAGGGTGGTAGCACAACTGGAAAGAGTGCAAAACCTGAAGCTAGTACTGTACCTGCAGCTCCTCGAGTTAAGCCTGAACTCCCCTTACCCTTAATCTCTAGGCTTAATGCTTGTTCTGGATCACACAGGAAGAAAGTTCAACCTGATAAAAATGATATGGAGGTTTCCGAGTTTCTCTGTGAATGCAAGCCTTCCCACTATTTTGATCCTTTATTCTGTGGAAATTTGGTTGAAAGAAATAGAGAATCGAGATCAGGAGGGGAATCCTCTACTTTAAACGGGAGTTCCAAGTCTAAGACTTGGTTTATTTGGGACTCCTCTATGCTGCATCAATCCTGTTTAAATGGAAAGAGTGGTCATGTACTATCTGCAGATGATCCTACACTTCGATGCCCAACTGAGGTGGAACAGTCCATCCTTGAAGATTTAAGGAACCGTGTACAGCTCAGCAGTGTTGCATTGCCGTCAGTTAGCTTTTACACATTTATAAATACACATAACAGTTTAAGCTGTTCATCGATATCCCATGACGGATCATTAATTGCTGGAGGATTTTCTGACTCATCACTCAAGGTTTGGGATATGGCAAAGCTTGGACAACCGACTGCCAGTTCTCTTTTGCAGGGTGAGAATGTCACATCACCAAATGATCAAATGTTTGGGCAAGGGGTTGGGAAAAGACAGTATACACTATTTCAAGGTCATTCAGGACCTGTTTATGCAGCCTCTTTTAGTCCCGTGGGAGATTTTATCCTTTCATCCTCAGCAGACTCAACAATTCGGTTATGGAGCACCAAACTTAATGCCAATCTTGTTTGTTATAAGGGTCACAATTACCCTGTCTGGGATGTTCAGTTTAGTCCTGTAGGGCATTATTTTGCCAGCTCTTCACACGACAGAACTGCTAGGATTTGGTCAATGGACAGGATACAGCCCTTAAGAATAATGGCAGGGCACTTATCTGATGTTGATTGTGTACAATGGCATGCCAACTGCAACTACATTGCAACTGGTTCCAGTGACAAAACAGTTCGACTATGGGATGTGCAGAGCGGTGAGTGTGTCCGGGTTTTTGTTGGTCACAGAGGTATGATTTTGTCTTTGGCAATGTCTCCTGATGGTCGCTACATGGCATCTGGGGATGAAGATGGCACGATCATGATGTGGGACCTCTCTAGTGGCCGCTGTCTCACCCCATTGATTGGGCACACGTCTTGTGTCTGGTCCCTTGCATTCAGTTCTGAAGGTTCAATTCTAGCATCTGGATCGGCTGATTGCACTGTTAAATTGTGGGATGTAAATACGAGCACCAAGGTTTCAAGGGCTGAAGAAAAAAGTGGGAATGCTAACAGACTTAGATCGCTGAAAACTCTGGCAACGAAATCAACCCCAGTTTACTCATTGCGGTTTTCTCGAAGGAATCTTCTTTTTGCGGCCGGGGCTCTAGCAAAAAGTGGCATGGATGACGATGTTGTTGTTGAGTTGAAGTCCATGATGATGAGAGTGTGTGGGGTTGAGTTGGGGTTTGTTTGGTGGGAATTGGAACAAAGCAGAGCCAGATTGGAAGTAAATTCCAGCAATGGAAGTTGA 2565 0.4378 MEDDKIVGYVTAYLKKKGFTQTEKIFQEEFQQNKTTNSSSSNSLLEPDIANHLLAFSQLESGPARFHDGYSKLRTWTYSSLDLYKHELLRVLYPVFIHCFMDLVAKGHVQEARNFFNTFREDHEMMHLRDLQKLEGVLSPTHLEEMEFAHSLRQSKFNIKICEVLYAGPWGFVILVNCLILYTEINVYKIFIISFYVVDKLIADRNIYSGIYGMPLLLITLSWWIWLMQGLNGVSPGQPSLISDDPEAVTLTGSSQEAANRINQKEIHWGLLEDSLEERLEKAGVLLSDSEKGEGETKEGENDETKKRSIEGGKQGGSVKKVKKDKGGSTTGKSAKPEASTVPAAPRVKPELPLPLISRLNACSGSHRKKVQPDKNDMEVSEFLCECKPSHYFDPLFCGNLVERNRESRSGGESSTLNGSSKSKTWFIWDSSMLHQSCLNGKSGHVLSADDPTLRCPTEVEQSILEDLRNRVQLSSVALPSVSFYTFINTHNSLSCSSISHDGSLIAGGFSDSSLKVWDMAKLGQPTASSLLQGENVTSPNDQMFGQGVGKRQYTLFQGHSGPVYAASFSPVGDFILSSSADSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGECVRVFVGHRGMILSLAMSPDGRYMASGDEDGTIMMWDLSSGRCLTPLIGHTSCVWSLAFSSEGSILASGSADCTVKLWDVNTSTKVSRAEEKSGNANRLRSLKTLATKSTPVYSLRFSRRNLLFAAGALAKSGMDDDVVVELKSMMMRVCGVELGFVWWELEQSRARLEVNSSNGS 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03026 854 ProSitePatterns Trp-Asp (WD) repeats signature. 702 716 IPR019775 -
Vimu10g03026 854 SUPERFAMILY Taf5 N-terminal domain-like 51 168 IPR037264 -
Vimu10g03026 854 Pfam WD40 associated region in TFIID subunit, NTD2 domain 61 166 IPR007582 -
Vimu10g03026 854 MobiDBLite consensus disorder prediction 285 350 - -
Vimu10g03026 854 ProSiteProfiles Trp-Asp (WD) repeats profile. 599 640 IPR001680 GO:0005515
Vimu10g03026 854 ProSiteProfiles Trp-Asp (WD) repeats profile. 683 724 IPR001680 GO:0005515
Vimu10g03026 854 FunFam Transcription initiation factor TFIID subunit 5 635 804 - -
Vimu10g03026 854 Gene3D - 637 716 IPR015943 GO:0005515
Vimu10g03026 854 MobiDBLite consensus disorder prediction 285 331 - -
Vimu10g03026 854 Gene3D - 459 636 IPR015943 GO:0005515
Vimu10g03026 854 SUPERFAMILY WD40 repeat-like 481 806 IPR036322 GO:0005515
Vimu10g03026 854 CDD WD40 420 673 - -
Vimu10g03026 854 ProSiteProfiles Trp-Asp (WD) repeats profile. 725 766 IPR001680 GO:0005515
Vimu10g03026 854 ProSiteProfiles Trp-Asp (WD) repeats profile. 557 589 IPR001680 GO:0005515
Vimu10g03026 854 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 2 806 - -
Vimu10g03026 854 PRINTS G protein beta WD-40 repeat signature 660 674 IPR020472 -
Vimu10g03026 854 PRINTS G protein beta WD-40 repeat signature 576 590 IPR020472 -
Vimu10g03026 854 PRINTS G protein beta WD-40 repeat signature 744 758 IPR020472 -
Vimu10g03026 854 SMART WD40_4 634 673 IPR001680 GO:0005515
Vimu10g03026 854 SMART WD40_4 676 715 IPR001680 GO:0005515
Vimu10g03026 854 SMART WD40_4 718 757 IPR001680 GO:0005515
Vimu10g03026 854 SMART WD40_4 550 589 IPR001680 GO:0005515
Vimu10g03026 854 SMART WD40_4 592 631 IPR001680 GO:0005515
Vimu10g03026 854 SMART WD40_4 480 519 IPR001680 GO:0005515
Vimu10g03026 854 Gene3D - 717 840 IPR015943 GO:0005515
Vimu10g03026 854 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 725 760 - -
Vimu10g03026 854 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 557 589 - -
Vimu10g03026 854 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 683 720 - -
Vimu10g03026 854 ProSitePatterns Trp-Asp (WD) repeats signature. 744 758 IPR019775 -
Vimu10g03026 854 ProSiteProfiles LIS1 homology (LisH) motif profile. 2 34 IPR006594 GO:0005515
Vimu10g03026 854 Gene3D TFIID subunit TAF5, NTD2 domain 45 167 IPR037264 -
Vimu10g03026 854 ProSiteProfiles Trp-Asp (WD) repeats profile. 641 682 IPR001680 GO:0005515
Vimu10g03026 854 ProSitePatterns Trp-Asp (WD) repeats signature. 506 520 IPR019775 -
Vimu10g03026 854 CDD WD40 557 806 - -
Vimu10g03026 854 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 641 678 - -
Vimu10g03026 854 ProSiteProfiles Trp-Asp (WD) repeats profile. 487 520 IPR001680 GO:0005515
Vimu10g03026 854 ProSitePatterns Trp-Asp (WD) repeats signature. 660 674 IPR019775 -
Vimu10g03026 854 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 599 633 - -
Vimu10g03026 854 Pfam WD domain, G-beta repeat 677 715 IPR001680 GO:0005515
Vimu10g03026 854 Pfam WD domain, G-beta repeat 719 757 IPR001680 GO:0005515
Vimu10g03026 854 Pfam WD domain, G-beta repeat 596 631 IPR001680 GO:0005515
Vimu10g03026 854 Pfam WD domain, G-beta repeat 636 673 IPR001680 GO:0005515
Vimu10g03026 854 Pfam WD domain, G-beta repeat 489 519 IPR001680 GO:0005515
Vimu10g03026 854 Pfam WD domain, G-beta repeat 554 589 IPR001680 GO:0005515
Vimu10g03026 854 CDD TAF5_NTD2 63 163 IPR007582 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03026 Vimu-Chr10 41152165 41166149 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03026 618 810 Miscellaneous Gene Families AT5G08390 27.461 3.04e-20 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03026 K03130 - gmx:100805953 679.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02742 1 39616656 39627604 Vimu10g03026 10 41152165 41166149 PCT