Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03009 ATGCTGCGTAAGCTTGTGTCAGGGCCACCCAAGAACAAGCCCGGCACCGTCCCCGTTCACCTCAACGTCTATGATCTCACCCCAATCAATGGCTATGCCTATTGGCTTGGCCTTGGTGTCTACCATTCTGGGGTTCAAGTTCACGGGGTTGAGTACGGTTTTGGTGCACATGAGCATGACACAACGGGGATTTTTGAAGTGCAACCGAAACACTGTCCTGGGTTCACTTTCAGAAAGTCGATTTTCATCGGAACAACAGATCTGGGTCAGAAAGATGTTCGCGCGTTCATGGAGAAACTGGCTCAGGAGTACTCTGGCAACACCTATCATCTCATCTCCAAAAACTGCAACCACTTCTGTAACGATGTTTGCCTCAAGTTAACGGGAAAGTCAATCCCTCGATGGGTCAATCGCCTTGCTCGACTTGGTCTTCTTTGCAACTGCGTTCTTCCCCCTGGCCTAAATGACACGAAGGTTCCACAAGCTACATCAGACAGAGTTCAGGAGGGAGAAAAGAGGAAAATAAGAAGTCAATCTTGCAGGTACGAGGGTTCTTCGAATCCTTCGTTGTCACGACGTTCAGCAATTAAAAGTAGTAGCCAAAGACATTGTCTTCCAGGATCTACATCTTTGCTTAATGCTACTCCAGCCTCAACCTTAACAGTGAAGTAG 672 0.4792 MLRKLVSGPPKNKPGTVPVHLNVYDLTPINGYAYWLGLGVYHSGVQVHGVEYGFGAHEHDTTGIFEVQPKHCPGFTFRKSIFIGTTDLGQKDVRAFMEKLAQEYSGNTYHLISKNCNHFCNDVCLKLTGKSIPRWVNRLARLGLLCNCVLPPGLNDTKVPQATSDRVQEGEKRKIRSQSCRYEGSSNPSLSRRSAIKSSSQRHCLPGSTSLLNATPASTLTVK 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03009 223 ProSiteProfiles PPPDE domain profile. 17 154 IPR008580 GO:0008233
Vimu10g03009 223 Gene3D PPPDE domains 12 171 IPR042266 -
Vimu10g03009 223 PANTHER DESUMOYLATING ISOPEPTIDASE 16 197 IPR008580 GO:0008233
Vimu10g03009 223 MobiDBLite consensus disorder prediction 159 209 - -
Vimu10g03009 223 MobiDBLite consensus disorder prediction 165 179 - -
Vimu10g03009 223 SMART DUF862_2a 17 155 IPR008580 GO:0008233
Vimu10g03009 223 MobiDBLite consensus disorder prediction 180 209 - -
Vimu10g03009 223 Pfam PPPDE putative peptidase domain 18 150 IPR008580 GO:0008233
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03009 Vimu-Chr10 41000906 41002458 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03009 K22763 - gmx:100306675 430.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02663 1 38519241 38521047 Vimu10g03009 10 41000906 41002458 PCT