Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02961 ATGGCACCATCTGACAGGCATGCTGTTTTAACATGTCACTCTCGTCTTTCTTTCTTCAAGTGGGTGACTTGCATTCTCAACCTTTTACCAGCCAATGGACTTGAAGAGGTCTACCAAAATGGTGTTAATGGCAAATTGTCTAACTCTGAAATGGATGACATTGCCTCAAATGTAGACACTGCTGTCACTAAAATTGCACAAACTGAAGCTCCAAATGGAATTTCTGAAAATTTCATCCAGTATGATAGCACTGCAACTGATTACTCATGCAAGGCAGAAATCAAGGAAGGATCAAATGACTACATAGGTGTGAACAATGTCACCATTTCTAAGGACGAGGAAGCAGAAATCGTAGATCAGACAGAGCAATCAAAAGCAGGAAAAGGTCCTGTCAAGAGTAAGAATGCAAAGTCACCAAGCCCCAGAGGTGTTCATGCAAGTTCAATTAAAAAGAACAAAGATGGAAAAGGTGAAGAGGTAGCATCTACTGTTTCTAATGGTACTTTTGCTTCAAACTCCATCCCAAGAGAGCATATTAAAAATAGATCATTGACCGACAAGCAGGCTCGACTGTCGAAGCATGCTGGGAAGTCTGGCGTGGCACCTTCTGAAGCATCAATGGAGAAGAACAGACCACGATTATCAAAGAAAGGGCCCCCTGATAATCTTAATCATCAAGGAGAAGCAGAATCTTCTTCTCCTACTGCAGAAGATGCAAAACCTCGCAGGGTAGGGATGCTCCCAAATTATGGATTCAGTTTCAAGTGTGATGAGCGAGCTGAGAGAAGAAGAGAGTTCTACACTAAACTTGAGGAAAAGATTCATGCAAAGGAAGTGGAGGAGAGTAACCTGCAAGCGAAAACCAAGGAGACCCAGGAAGCTGAGATTAAGATGCTTAGAAAAAGTCTAGGATTTAAAGCAACTCCAATGCCAAGCTTCTACCAGGAGCCTCCTCCTCCTAGAGTAGAATTTAAAAAGATGCCCACTACAAGAGCTAAATCTCCCAAACTTGGTCGTAAGAAGAGTTCAGTAGTTTCGGAGTCAGAAGGAAACACTGGCAATAGTGTTCGACAAGGTCGATTAAGTCTGGATGAGAAAGTGTCTCAGACTAACCTCACTAAAGGAGTTACTCTTGTTCATCAAAATAGGCCACAACGAAAGTCTCTTCCTCCTCGACTGACTTCTGAAAAGACCAGTTCATCCAATCAGGCATCTATTCGGACCCCATCTAAGGCAGTGAATGATGACAAAACCTCGTTATCAGGTGTAACAACTGAAGTTACCACCTTATCCATTTCAACTGGGGAAGAGAAAGTTGAAGCAGTCGCAGCCACTGAAGAGAGCAATGTCTTATTGGATGAGACAAGTAAAACTCTGCCTCTGATTGTAGAGCCAAGTGAAGCCAAGTCACCTGCTGTGAATGGTGATTTAGCCATTGAAGAGAAACCGCAACAACTCACCTTGTCACAAGAACCCATAGTGGCAGAGCTCTGA 1494 0.4304 MAPSDRHAVLTCHSRLSFFKWVTCILNLLPANGLEEVYQNGVNGKLSNSEMDDIASNVDTAVTKIAQTEAPNGISENFIQYDSTATDYSCKAEIKEGSNDYIGVNNVTISKDEEAEIVDQTEQSKAGKGPVKSKNAKSPSPRGVHASSIKKNKDGKGEEVASTVSNGTFASNSIPREHIKNRSLTDKQARLSKHAGKSGVAPSEASMEKNRPRLSKKGPPDNLNHQGEAESSSPTAEDAKPRRVGMLPNYGFSFKCDERAERRREFYTKLEEKIHAKEVEESNLQAKTKETQEAEIKMLRKSLGFKATPMPSFYQEPPPPRVEFKKMPTTRAKSPKLGRKKSSVVSESEGNTGNSVRQGRLSLDEKVSQTNLTKGVTLVHQNRPQRKSLPPRLTSEKTSSSNQASIRTPSKAVNDDKTSLSGVTTEVTTLSISTGEEKVEAVAATEESNVLLDETSKTLPLIVEPSEAKSPAVNGDLAIEEKPQQLTLSQEPIVAEL 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02961 497 MobiDBLite consensus disorder prediction 344 419 - -
Vimu10g02961 497 PANTHER PROTEIN WVD2-LIKE 4 117 439 IPR044833 GO:0008017
Vimu10g02961 497 MobiDBLite consensus disorder prediction 159 178 - -
Vimu10g02961 497 MobiDBLite consensus disorder prediction 179 193 - -
Vimu10g02961 497 Pfam Targeting protein for Xklp2 (TPX2) domain 252 323 IPR027329 -
Vimu10g02961 497 MobiDBLite consensus disorder prediction 308 419 - -
Vimu10g02961 497 MobiDBLite consensus disorder prediction 120 250 - -
Vimu10g02961 497 Coils Coil 267 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02961 Vimu-Chr10 40583391 40589451 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02961 - - gsj:114408962 710.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02961 10 40583391 40589451 Vimu10g02961 10 40583391 40589451 ECH
Vimu1g02610 1 37667952 37673044 Vimu10g02961 10 40583391 40589451 PCT