Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02871 ATGCTGAGGAAGAGGAATAGGTCCGTGCAGAAGGAACAACACCACATGAGTAATCTGACACAGTGTGAAGCCAATTCAGAGCACTATTCGCAGAGTCATCATGGTTTGGGACGCAACAACATCAAGCGACACTCAATTTTCAATGTTCCTTGTCTGTTTGTGGGTCTAGGTCCGAAAGGGTTGTTGGATTCTGATTCAGTTAGGAGCCCCACTTCTCCACTTGATGCTAGAGTTCTTTCAAATCTAGGCAACCCTGTTAGGAAGCCAAGATCTTCAACTCATGAAGGGCACCCAAGGAGTTGGGATTGTTGCAAAGTAGGTCTAGGCATTGTGGAGTCTTTGGAAGACTGTTCTAGGTTTTCTGGGAAAATTCTGCAGTCACCAGAGAGCAAGAGGGTTAGTCTGAGTCCCCAAGTGATGATCAAAGCCCCAAATTGTCAAATCCATAGGGATTTTCTTGAGGGATCTAAGTCTCTGCCCAAAGATTTTTGTAAAGCTCCTTATGCCCCTAAAAATGGATCTGTTACCCACAAGGGTGAATCTGAGTCCACTGTTCTTTTTGAGATTGGAGAAAGTGGCCTTGAGCATGAACTGTTTGGGAGAACCAGAACCAGGTCTTGTTCATTGGACTCTTGCAGTCCACTGAAAGAGCTTTCTGGCTTAAACACTTTCTTCTCTGATTCAGACACTGAAAATTTAGCTGTGAAAGATGTCAACATTCAATTGTGCTCTCCTCCTCATTTTATTGGGGGAAGCCAGTACTCAAATACCTTCCCCCCACCTACAAAGTTGAACACAAACCCTCTTTCCATTAGCTCTTCCAATGAATTTATCAACTCTCTGTCTGCTACTGAGATTGAACTCTCTGAGGACTACACATGTGTGATTTCCTACGGCCCTAATCCCAAAACAACTCACATTTTTGGGGATTGCATTCTGGAGACTCATTCCAATGCATTCAAAATCCATGAAGAGAAGGAAAAGGTAGTGAACACTGTTGCTAACAGGTCAGGGAGTCCAAACCCATATCCCTCAAGCGACTTCTTGAGTTTCTGCCACCATTGCAAGAAGAAACTAGAAGAGGGGAAGGACATTTATATTTATGGGTGA 1110 0.4387 MLRKRNRSVQKEQHHMSNLTQCEANSEHYSQSHHGLGRNNIKRHSIFNVPCLFVGLGPKGLLDSDSVRSPTSPLDARVLSNLGNPVRKPRSSTHEGHPRSWDCCKVGLGIVESLEDCSRFSGKILQSPESKRVSLSPQVMIKAPNCQIHRDFLEGSKSLPKDFCKAPYAPKNGSVTHKGESESTVLFEIGESGLEHELFGRTRTRSCSLDSCSPLKELSGLNTFFSDSDTENLAVKDVNIQLCSPPHFIGGSQYSNTFPPPTKLNTNPLSISSSNEFINSLSATEIELSEDYTCVISYGPNPKTTHIFGDCILETHSNAFKIHEEKEKVVNTVANRSGSPNPYPSSDFLSFCHHCKKKLEEGKDIYIYG 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02871 369 Pfam zinc-finger of the FCS-type, C2-C2 341 368 IPR007650 -
Vimu10g02871 369 MobiDBLite consensus disorder prediction 13 35 - -
Vimu10g02871 369 MobiDBLite consensus disorder prediction 66 98 - -
Vimu10g02871 369 PANTHER FCS-LIKE ZINC FINGER 11 1 368 IPR044585 -
Vimu10g02871 369 ProSiteProfiles Zinc finger FLZ-type profile. 347 369 IPR007650 -
Vimu10g02871 369 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02871 Vimu-Chr10 39913386 39914495 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02871 - - gmx:100779553 598.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02871 10 39913386 39914495 Vimu10g02871 10 39913386 39914495 ECH
Vimu1g02530 1 36643868 36645179 Vimu10g02871 10 39913386 39914495 PCT