Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02850 GTGGCTGTTGCTCGAACGATGGTGAAGTGCATGGATTTGCATTCATGTTGGTGGCGCGATTTCGAGTGTGTTGATGCGAGAGCTACCGACGTCCGTTACATTCACAATGGTTGCACAAGTGGCTCGCGACACAAGTGTCATGGTTATGTTGGAGAAAATAGAGATGAGGAAGGACAATATGACATGTTGTGGTTGGGGATGGCGAATGATAAAGTGATTGATGAAGGTGAGAAGAACGAGAGCGGTGGTACGAATTCCTCCGAGGGTGGGACTAAGAAACGAAAAGGATTTTTGTCGCGAATTTGGAATGGGATACTTAGGTTACACCGTGATGATTTTGAGAAGAGACTCCAATACATTTCTAAAGAGGAGGCTCAAGTTATGACTAGGATGAACAGGAGATCACGATCCTGGACGAGAATTTCCCGCCATCTTATTGTGTTTTCTGTCATATTTGAGGTTGTTGCTATAGTTTATGCTATTATGACAACAAGATCAATTCATATGAATTGGAAAATGAGAGCACTACGGGTTTTGCCAATGTTTCTTTTGCCTGCACTGTCATCCGCTGCCTATGCAGCATTTGTAAGCTTCACAAAGATTTGTGATCGTAGGGACCAGAAAATTCTTGAAAGGCTTCGAGCTGAAAGGCAAGAAAAAATTGATGAGCTCAAAGAAAAGACAAATTATTACACTACACAACAGCTCATTCAGAGATATGATCCAGACCCAGCTGCAAAAGCAGCTGCTGCAACTGTTTTAGCGTCTAAGTTGGGTGCAGATTCTGGTTTGAGAGTGTATCTGGAAGATCAACTCAATTCCGATGCTTCAATAGGGAAGAGCAATGATGTTGAACTTATGCAGTCCTCTGGAATTCGAAATCGGAGACAAGTTCAATCTAGAAGCACTAGTCCAAGATCAGCCACACTAAATTCTGGTGATCAACAAGTTGGTCTTGGGGGAAGTTATCAAACCCAGACTTTTGAGGACAATCAGCCTGTTGTTGTTGAACATCACCAACCTCAAACTTCAAACACACAAGATGGTGGATGGATTGCACGAATTGCAGCTTTGCTTGTGGGTGAAGATCCAGCACAGTCTTATGCTCTCATATGTGGTAACTGCTATATGCATAATGGTTTAGCTCGGAGGGAGGATTTCCCATTTATCACATACTACTGCCCACACTGTCGAGCACTAAACAAACCAAAACAATTGGATGAACGTAATTCTAGTCTTACTTCTCCAAATACAGGGACTCCAAAAACAGACAATAGTTCCACTGATGCAGTTAAGAATATTAGGGCTTCTACAGCTGAGAGTATAATAGCAGGCAGTAGTCCTGGAAGTGCTTCTAGCTCTGAGATTGGGGAAGTAACAGAAAGGGCAAGTATGGATGAGAAAGTTGATTAA 1413 0.426 VAVARTMVKCMDLHSCWWRDFECVDARATDVRYIHNGCTSGSRHKCHGYVGENRDEEGQYDMLWLGMANDKVIDEGEKNESGGTNSSEGGTKKRKGFLSRIWNGILRLHRDDFEKRLQYISKEEAQVMTRMNRRSRSWTRISRHLIVFSVIFEVVAIVYAIMTTRSIHMNWKMRALRVLPMFLLPALSSAAYAAFVSFTKICDRRDQKILERLRAERQEKIDELKEKTNYYTTQQLIQRYDPDPAAKAAAATVLASKLGADSGLRVYLEDQLNSDASIGKSNDVELMQSSGIRNRRQVQSRSTSPRSATLNSGDQQVGLGGSYQTQTFEDNQPVVVEHHQPQTSNTQDGGWIARIAALLVGEDPAQSYALICGNCYMHNGLARREDFPFITYYCPHCRALNKPKQLDERNSSLTSPNTGTPKTDNSSTDAVKNIRASTAESIIAGSSPGSASSSEIGEVTERASMDEKVD 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02850 470 MobiDBLite consensus disorder prediction 407 470 - -
Vimu10g02850 470 MobiDBLite consensus disorder prediction 288 321 - -
Vimu10g02850 470 PANTHER ENDOPLASMIC RETICULUM JUNCTION FORMATION PROTEIN LUNAPARK 92 467 IPR040115 GO:0071786
Vimu10g02850 470 Coils Coil 207 230 - -
Vimu10g02850 470 MobiDBLite consensus disorder prediction 407 459 - -
Vimu10g02850 470 Pfam Predicted integral membrane zinc-ribbon metal-binding protein 351 401 IPR019273 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02850 Vimu-Chr10 39774518 39781029 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02850 K23292 - gmx:100797087 585.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02513 1 36457814 36463513 Vimu10g02850 10 39774518 39781029 PCT