Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02757 ATGCATGTTGCCGAGAGAGATGTTCTTCATGAGATGGTTAAAATAGCGAAGAAGAAGGTCCGAGATAAGATATTGGTTCTTATAGATAGTTGGCAAGAGGCTTTTGGAGGGCCAAGATCAAGATATCCACAGTATTATGCAGCATACCAGGAGCTTGTGCGTGCTGGGGCAATATTCCCTCAGAGGTCTGAGCGATCTGCACCTGTATTCACACCGCTACAAACACAACCATTGTCATCATACCCTCAAAATATACGAGATACTTTTGCTCAACAAGACACAGCTGAGTCATCTGCAGATTCTGAGTTTCCAGCCCTAAGTTTGTCAGAAATTCAAAATGCACGTGGTATTATGGATGTTCTTGCAGAAATGCTCAATGCATTGGACCCTGGTAACAAAGAAGGCCTTTACCACGTTGAAGCATTGCATGGTTTATGCTGTCGACCTCAAGGTCTTCAACAGGAAGTTATTGTTGATTTAGTGGAGCAATGTCGAACATACAAGCAGAGAGTGGTACACCTTGTTAATTCAACTTCTGACGAATCATTGCTATGCCAAGGCTTATCGCTGAATGATGATCTTCAGCGTGTCTTGGCCAAGCATGAATCCATTGCTTCGGGAACTTCTGCTTCGGGAACTTCTTCGGGAACTCCTGCTCAAAATCATACTGAGAATTTGAAGACTGCACCTACTGGAACACTTTTAGATTTTGATGGTCCTTTGGTTGATTTTGGAGATACCAGTAAACAGACGGATGGAAGGTCGTCTGCTAATGCTGAAACTGAGTCTCAATCTTTCAACCAGTTACTGCTTCCAGCGCCCCCAACATCAAATGAACCAGCTTCCCCTGCAAAGGTTGATCCTAAAGTGGACCTGCTCAGTGGTGACGACTATAACTCACCAAAAGCAGAGACTTCACTTGCTCTCGTTCCTTTAGGCGAACAGCAGCCAGCCAGCCCTATGTCTCAACAGAATGCCCTTGTTCTTTTTGATATGTTTTCTAATGGAAGCAATCCACCTACTTCTGTTAATATCCAGCCAATTAATGTTGCCGGTCAAACCAGTCCATTTTCTCCTCAATGTCAGCAGCAGCAGACTTTCATATCTCAAGGGCTGTTTTACCCCAATGGAGGTGGGCCAAATGTTGGATCACCTCGGTATGAGCAATCACCTTATATGCAGAGCACAGGTCATTCTTGGAATGGCCAGGTTGCGCAGCAGCAACAGCCTCCTTCACCAGTTTACGATATTTCGCATCATTCAGCCTTTTTCCGGTTTACAGGTACACCAAGTGGTGGATCATTTCCGCCGCCTCCGTGGGAAGCACAACCTACAGACAATGATAGTCCAGTATTGGGCAGTCAATACCCACAACCATTGCAAGTCACTCAAGTGGTAATGACGCATATACAAAGTGCTGCACATCCTCAGGGACCTCAAGCGGCGGGGCATGACCAGGCTGTTGGAATGTATATGCAACCAAATGCTAGCCATATCTCAACAATCAACAACAATGTTCAAAGTAATCAATCAGGCTTGTACCCGCAGCATATTCAGGGTGTTGCCAGTCCCTATATGGGTATGTCTTCACATCCAATGCATTCCATGTATCCTCAACAAATGTATGGCAACCAATTCGTAGGATATGGCTATGGTCAGCAACCAGCGGTTCAGTATGTTGAGCAGCAAATGTATGGTTTATCAATGAGAGATGATGGTGCTCTGAGAAATTCTTACCAGGTTTCTTCTGCATCCTATGTGCCACCTGTGAAGCCTTCCAAACCAGAGGATAATTTATTTGGGGACCTTGTTAACTTGGCAAAAGTGAAACCAAAACCTACTGCTGACCGAACTGGTGGCGTGTAA 1866 0.4502 MHVAERDVLHEMVKIAKKKVRDKILVLIDSWQEAFGGPRSRYPQYYAAYQELVRAGAIFPQRSERSAPVFTPLQTQPLSSYPQNIRDTFAQQDTAESSADSEFPALSLSEIQNARGIMDVLAEMLNALDPGNKEGLYHVEALHGLCCRPQGLQQEVIVDLVEQCRTYKQRVVHLVNSTSDESLLCQGLSLNDDLQRVLAKHESIASGTSASGTSSGTPAQNHTENLKTAPTGTLLDFDGPLVDFGDTSKQTDGRSSANAETESQSFNQLLLPAPPTSNEPASPAKVDPKVDLLSGDDYNSPKAETSLALVPLGEQQPASPMSQQNALVLFDMFSNGSNPPTSVNIQPINVAGQTSPFSPQCQQQQTFISQGLFYPNGGGPNVGSPRYEQSPYMQSTGHSWNGQVAQQQQPPSPVYDISHHSAFFRFTGTPSGGSFPPPPWEAQPTDNDSPVLGSQYPQPLQVTQVVMTHIQSAAHPQGPQAAGHDQAVGMYMQPNASHISTINNNVQSNQSGLYPQHIQGVASPYMGMSSHPMHSMYPQQMYGNQFVGYGYGQQPAVQYVEQQMYGLSMRDDGALRNSYQVSSASYVPPVKPSKPEDNLFGDLVNLAKVKPKPTADRTGGV 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02757 621 MobiDBLite consensus disorder prediction 431 452 - -
Vimu10g02757 621 ProSiteProfiles VHS domain profile. 1 60 IPR002014 GO:0035091|GO:0043130
Vimu10g02757 621 PANTHER TOM1-LIKE PROTEIN 1 612 IPR044836 GO:0035091|GO:0043130|GO:0043328
Vimu10g02757 621 Pfam GAT domain 116 206 IPR004152 GO:0035091|GO:0043130
Vimu10g02757 621 CDD GAT_GGA-like_plant 110 204 - -
Vimu10g02757 621 Gene3D - 1 70 IPR008942 -
Vimu10g02757 621 Gene3D - 104 213 IPR038425 -
Vimu10g02757 621 MobiDBLite consensus disorder prediction 204 296 - -
Vimu10g02757 621 CDD VHS 1 54 - -
Vimu10g02757 621 ProSiteProfiles GAT domain profile. 102 206 IPR004152 GO:0035091|GO:0043130
Vimu10g02757 621 MobiDBLite consensus disorder prediction 204 230 - -
Vimu10g02757 621 SUPERFAMILY GAT-like domain 62 207 - -
Vimu10g02757 621 MobiDBLite consensus disorder prediction 248 275 - -
Vimu10g02757 621 SUPERFAMILY ENTH/VHS domain 2 60 IPR008942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02757 Vimu-Chr10 38940359 38944736 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02757 - - gmx:100805762 940.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02757 10 38940359 38944736 Vimu10g02757 10 38940359 38944736 ECH
Vimu10g02757 10 38940359 38944736 Vimu1g02431 1 35208762 35209948 PCT