Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02555 ATGTTGTTAGGGAAGAGACCTCGTCCTCCAATGAAGAAAACTACCAGCATGTCAGAGATAACCTTCGATCTCAACACAACCTTGGACGACGATGACCAAAACAACCTCGTCAAGGGAGGACTTGGGCCGGACCCAGTTGGGTCGAACGGCTTAGATCAGAGCCGGGTTTGGGCCTTGGTTTCACCCAGAAACCATAGAAGGCATTCGGAAGATTCCGCACACACCCCTGAGTTTTTGCGCGTTTGCTTTCTCTGCAAACGCCGTTTAGTTCCTGGTCGTGACATCTACATGTACAAAGGTGACAGTGCTTTCTGCAGTTCAGAATGCCGAGAAAAACAGATGAAGCAGGATGAACGAAAGGATAATAATAAGTGTGGTGTGGCATCAAAGAAACAAGTTGCAGCTACCCCTTCTGGGTCTCAAGTTAGAAGTAACAAAGGCGAAACCGTTGTTGCCTTGTAG 462 0.4805 MLLGKRPRPPMKKTTSMSEITFDLNTTLDDDDQNNLVKGGLGPDPVGSNGLDQSRVWALVSPRNHRRHSEDSAHTPEFLRVCFLCKRRLVPGRDIYMYKGDSAFCSSECREKQMKQDERKDNNKCGVASKKQVAATPSGSQVRSNKGETVVAL 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02555 153 ProSiteProfiles Zinc finger FLZ-type profile. 77 121 IPR007650 -
Vimu10g02555 153 PANTHER FCS-LIKE ZINC FINGER 5 1 147 - -
Vimu10g02555 153 MobiDBLite consensus disorder prediction 133 147 - -
Vimu10g02555 153 Pfam zinc-finger of the FCS-type, C2-C2 70 120 IPR007650 -
Vimu10g02555 153 MobiDBLite consensus disorder prediction 116 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02555 Vimu-Chr10 36858288 36858830 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02555 - - var:108331042 285.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02555 10 36858288 36858830 Vimu10g02555 10 36858288 36858830 ECH
Vimu1g01798 1 20504413 20504937 Vimu10g02555 10 36858288 36858830 PCT