Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02509 ATGTTCCCTCTGAATGTGCGAGGGACAGTGTCTGTGCTACAATCACGAGAACAAGCTTTGTCTTTTGTCATGGCCTTGTGCAGGTGTCTCTCCTTTTTTACTGGAAAGAAAGAGAAAAACAAGGGTGCTGCTGAAGGGTCTTCAACCGGGGACCTTAAAGCTCAACATGGCGAAATACAGCACCCGAAGATTTCATCAGAGCGTCGTGATTTGAAGCCGGCCACCCTTGATGTCACGGTACCCTTTGGTGTACAGAAGAATTCAAGGGGAAATGTGAGGATTATGAATCATGAGAGTCCTGCGAAAACTGAAGTGGAAGAAGCTTATGAAGGAGAAGACGAGCATGAGCAGTCTACTTCCATCAAGAGGGAGCTCTCTGATTTTGATCTTCAAGTCCACCAAGCTGCTGCAAACAAAGGAATATGTGATCCATCAAATGAAGAGATAAAATACCCGAGTCCGTATGAAGACCAAGCTAACATTCAATTCGAAGACACGGACCATAAATACAGCATAAAGAGTGATGATATAATCCAAAGTGGACATGTCAGTGATCCCGGGATTGGCAAGACTGACTTTTGGGCTTCTCCAGAGCTCAAGAGATCTTGTTCTAACCTGGAAAGAAGGGATGTACTTATGAAGACTTCTCATCTCTTTCCAACTTCCAAGTCACAGTCTTTTGAGGATTTACACGGATTATCAGCGTATCAGATGGCTAATCTAGAAAGCCCCAGGTCTGCGATGACTCACTGCAGTGCTGATAAAGTGATGTTGAAAAGGCATTCCTCAAGTCAAGTTCTCCCTTCTAGAAGTAAAAGATTGTGGTGGAAGTTGTTCCTCTGGAGCCACAGGAATATACATAGATCTAAGTCAAGCAAATCGACACAGATACATCCTGCAATTGCTGCTCTGAGTAGTCAATGTGGGTACTCCTCCGACACCCTTGAACCAAAGCAAGGCAAGGCATTGAGACACGAAGAATCACCCTCACCAACCTCATCTTTTGGGGAATACTTTCAGAAAAGCTGCGATGAACAAAATATTGTTGACCAAAGGTGGAGCAGATTTCAGAAAGACCATTTTGGATTTTGGCCACAAAACCAATGGGTGGCTTTCTCAACCGAATCATCCTCGCTTAGCAGAGTGGATGAGTGGGTAAAAGATCTCGAAATTGAGCAGCCACCTCCCGAGGATGACTTTGTTGACGACGGCACTGGAAACACTGCCTTCCCACCTTCTCCTGATGATGGTAGATCAATGGCAAGAAGCACATCTCAGTTGATTCGACATTCAGATGCCAATATTTCAAAAGAGATAATGAATGCCAATAGTCTGGTCCAGTCCCTGAACCCCGCCTCAACTGCTGCTCATATATCAGGCATTGGTATAAAAGCCATTCCCTCTCTTTCGCACTTCTTCAGTCTCCGCTCTGTCAATTTGTCAAACAATCTTATAGCTCACATCACGCCTGGATTTCTCCCAAAGGGTATTCATACCCTGAATCTTTCAAGAAACAAAATCAACACTATTGAGGGCCTCAGAGAATTAACCCGGCTCCGGGTACTTGATTTAAGTTATAATCGTATCTCAAGAATTGGACAAGGATTATCAAATTGTACCTTAGTGAAAGAACTATATCTTGCCGGGAACAAGATAGGTGATGTTGAGGGGCTCCACAGGTTACTGAAGCTAACAGTTCTGGACTTGAGCTTTAACAAGATCGCAACCACAAAAGCATTAGGCCAGCTGGTGGCTAACTACAACTCACTTCAGGCCTTGAGTCTGCTAGGAAATCCAATTCAAAGCAACATCAGTGATGAGCAGCTGCGCAAAGCAGTTAGTGGTCTTCTTCCAAAGCTTGTCTACCTGAACAAGCAATCTATAAAGCCTCAAAGGGGACGAGAAATACTCACTGATAGTGTTGCCAAAGCTGCACTTGGGAACAGCGGCCACAACTCCTACAGAAGAGTACTGAAGAAAGGTGGTGGCCAAGGAGGGCCAAGTTCCTCAGGTGTACATAGAGGCAGTGCTAGTGTTTCCCACAAAAGCAGGCACAGGTCAAGGAGCCGAACTAAGCGTCATTAG 2085 0.4494 MFPLNVRGTVSVLQSREQALSFVMALCRCLSFFTGKKEKNKGAAEGSSTGDLKAQHGEIQHPKISSERRDLKPATLDVTVPFGVQKNSRGNVRIMNHESPAKTEVEEAYEGEDEHEQSTSIKRELSDFDLQVHQAAANKGICDPSNEEIKYPSPYEDQANIQFEDTDHKYSIKSDDIIQSGHVSDPGIGKTDFWASPELKRSCSNLERRDVLMKTSHLFPTSKSQSFEDLHGLSAYQMANLESPRSAMTHCSADKVMLKRHSSSQVLPSRSKRLWWKLFLWSHRNIHRSKSSKSTQIHPAIAALSSQCGYSSDTLEPKQGKALRHEESPSPTSSFGEYFQKSCDEQNIVDQRWSRFQKDHFGFWPQNQWVAFSTESSSLSRVDEWVKDLEIEQPPPEDDFVDDGTGNTAFPPSPDDGRSMARSTSQLIRHSDANISKEIMNANSLVQSLNPASTAAHISGIGIKAIPSLSHFFSLRSVNLSNNLIAHITPGFLPKGIHTLNLSRNKINTIEGLRELTRLRVLDLSYNRISRIGQGLSNCTLVKELYLAGNKIGDVEGLHRLLKLTVLDLSFNKIATTKALGQLVANYNSLQALSLLGNPIQSNISDEQLRKAVSGLLPKLVYLNKQSIKPQRGREILTDSVAKAALGNSGHNSYRRVLKKGGGQGGPSSSGVHRGSASVSHKSRHRSRSRTKRH 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02509 694 ProSiteProfiles Leucine-rich repeat profile. 518 540 IPR001611 GO:0005515
Vimu10g02509 694 SMART LRR_sd22_2 561 582 - -
Vimu10g02509 694 SMART LRR_sd22_2 539 560 - -
Vimu10g02509 694 SMART LRR_sd22_2 494 515 - -
Vimu10g02509 694 SMART LRR_sd22_2 516 538 - -
Vimu10g02509 694 Gene3D Ribonuclease Inhibitor 534 633 IPR032675 -
Vimu10g02509 694 PANTHER NISCHARIN RELATED 231 655 - -
Vimu10g02509 694 FunFam Outer arm dynein light chain 1 protein 421 534 - -
Vimu10g02509 694 Pfam Leucine rich repeat 474 529 IPR001611 GO:0005515
Vimu10g02509 694 MobiDBLite consensus disorder prediction 40 72 - -
Vimu10g02509 694 MobiDBLite consensus disorder prediction 393 420 - -
Vimu10g02509 694 FunFam Outer arm dynein light chain 1 protein 535 633 - -
Vimu10g02509 694 ProSiteProfiles Leucine-rich repeat profile. 541 562 IPR001611 GO:0005515
Vimu10g02509 694 MobiDBLite consensus disorder prediction 678 694 - -
Vimu10g02509 694 ProSiteProfiles Leucine-rich repeat profile. 563 584 IPR001611 GO:0005515
Vimu10g02509 694 MobiDBLite consensus disorder prediction 652 694 - -
Vimu10g02509 694 SUPERFAMILY Outer arm dynein light chain 1 463 628 - -
Vimu10g02509 694 SMART LRR_typ_2 472 494 IPR003591 -
Vimu10g02509 694 SMART LRR_typ_2 516 539 IPR003591 -
Vimu10g02509 694 SMART LRR_typ_2 561 583 IPR003591 -
Vimu10g02509 694 Pfam Leucine Rich repeat 539 555 IPR001611 GO:0005515
Vimu10g02509 694 Pfam Leucine Rich repeat 563 574 IPR001611 GO:0005515
Vimu10g02509 694 MobiDBLite consensus disorder prediction 56 72 - -
Vimu10g02509 694 Gene3D Ribonuclease Inhibitor 418 533 IPR032675 -
Vimu10g02509 694 ProSiteProfiles Leucine-rich repeat profile. 496 517 IPR001611 GO:0005515
Vimu10g02509 694 MobiDBLite consensus disorder prediction 311 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02509 Vimu-Chr10 36319929 36323059 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02509 496 605 Receptor kinase-like Gene Family AT4G39400 35.593 9.96e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02509 - - gmx:100813969 1061.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02509 10 36319929 36323059 Vimu10g02509 10 36319929 36323059 ECH
Vimu1g01860 1 22950956 22952807 Vimu10g02509 10 36319929 36323059 PCT