Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02237 ATGGAAAATCTACATTTAGAGGAGACGACTGGAGTGAATTCTCAAGCTGTTGAGAACTTGAGGGTGGGTGATTCCGTAACTGATCAGAAGAAACAGTCAAAGGAGGTGGAGGGTCAGAATATTGGTCATGATGGTCCCGAGTTGGATGATATATCAGATGCGGATGATGTAAGGTCTAAGAGGAACGATGCGAGCAGGGAATTGCAATCTCGAACTCAACTGGAAAACTTGGAAACCAAATCTGAAACTGAAATTATTACTGATAGGCAAGAGGATTCTGGTGACAAGACGAGTGCTGGTGGAGATTTGGAGTTCAGAAACCAAGAAACAAATCTAGATGGTAGTTCTGGACGGAGTGGATTGGCTAAAGAAGTGGATGATAAGGAATCCAAGCAGATGTTTGATAAGTCAGATGAAATTCCGAGCGAGGACCCCAATTTGGAGCCTGTTTTTGATGGAACAGAGATTCCAGGGATGGAAGCTAACCGCAGTATGTCTGGCCGTAGGTTGGATGCAGATCAGGACTCCCCAGGTGTGGTCGAGAAAGCTGTGGCTCTTAAGAATTTTGTTAAGGAGAAGAGTGCGGTGGCAGTCTCCACCATGATGCGTCGCCTTTCTGGAAAAAGAGATGAAGGTGCTGTGGACAATGTTGATGATGAAGGTAAGGATGTATCGGATTTTGGAAAAGTTGGTGAAAACAAACTGGTGTCTGAGAAGGCAGTGGAGAAGTTTGACTGGAATCCCTTAAATTACATCAAGAAGTCATCCGATGCTGGTGTGGAAAACAAAACTGAGCACAGAGATTCAATAGTCATGAAAGGAAGGATTATACTGTACACGAAACTAGGTTGCCAAGAGTCTAACGAGATTAGGCTGTTTTTGCGTTTGAAAAGGCTTAGATACGTCGAAATCAACGTAGATGTGTTCCCTGGTAGAAAGAAGGAGCTGGAGAGGATTTCTGGATCTACTTCTGTGCCTAAGGTTTTTTTCAATGAAATACTTATTGGAGGCTCGAGTGAGTTGAAGACTCTAGATGAGTCTGGCAAGCTTGATGAGAAGGTTGACTTTCTAATTACTGAAGCACCATTATTTGAGGCCCCATCGCCACCTCTTTCTGGGGAGGATGATGTGCCGAGTAGTGGACTACCGGATGAAATGGCAATTATTGTCCGCAAAATGAAAGAATCCATAGTTGTGAAGGACCGCTTGCATAAAGTGCGCAGGTTCACGAACTGTTTTCTTGGCTCAGAAGCTATCGACTTCTTATCAGAAGATCAGTATTTGGAAAGGCCAGAGGTAAGCTTGGTCTTAAGCCTGAAGCGTGGGTCTATTGCCCGTACACAACCCATCTATGACATATTGTATGCAGCTGTTGAGTTTGCGCGAAAGCTTGCCGAAAAACACTTTTTTCGACATGTTACTGATGAAAATCTATTTGAGGATGGAAACCACCTGTATCGGTTTTTGGATGATGACCCCGTTGTGGTGTCACAATGTCACAACATTTCTAGAGGCATAAGCACCTTGAAGCCCAAGCCTTTAGCGGAAATTGCGTCAAGACTAAGGTTTCTGTCTGGTGCAATATTTGAAGCCTATTCTTATGAAGATGGACATCGTGTTGATTATACTAGTATACATGGAAGTGAGGAGTATCTGAGAATTGTGGAAGAGCTCCAGAGAGTGGAAATATCGGATTCGTCAAGAGAAGAGAAGCTTGCGTTCTTTATTAATCTTTATAATATGATGGCCATCCATGCAATCTTAGTGTTGGGCCATCCAGATGGAGCACTGGAAAGAAGGAAATTATTTGGAGAGTTCAAATATGTTATTGGTGGGTCTACCTACTCACTTTCAGCTATTCAAAATGGCATATTGCGAGGAAACCAGCGACCACCATATAACCTTAAGAAGCCATTTGGGGCAAAAGATACACGCTCGACAGTGGCACTTCCTTACCCTGAGCCTCTAATTCATTTTGCTTTGGTATATGGTACCCGATCTGGGCCTGCACTTCGGTGCTACACTCCTGGAAAGATTGATGAAGAGTTATTGGATGCAGCTCGTAATTTTTTGAGAAATGGAGGCGTTGTAATTGATTCGAGTACAAAGGCTGTAAATGCTAGTAAGATCCTTAAATGGTACAGTATAGATTTTGGCAAGAACGAGGTAGAGGTGATAAAGCATGTTTCAAACTACTTAGATCCAGCTGACTCTGAAGTATTGTTGGACCTACTTGCTGCTTCCGAGTTGAAGGTGACATATCAGCCTTATGACTGGGGTTTGAACTGCTAG 2292 0.4328 MENLHLEETTGVNSQAVENLRVGDSVTDQKKQSKEVEGQNIGHDGPELDDISDADDVRSKRNDASRELQSRTQLENLETKSETEIITDRQEDSGDKTSAGGDLEFRNQETNLDGSSGRSGLAKEVDDKESKQMFDKSDEIPSEDPNLEPVFDGTEIPGMEANRSMSGRRLDADQDSPGVVEKAVALKNFVKEKSAVAVSTMMRRLSGKRDEGAVDNVDDEGKDVSDFGKVGENKLVSEKAVEKFDWNPLNYIKKSSDAGVENKTEHRDSIVMKGRIILYTKLGCQESNEIRLFLRLKRLRYVEINVDVFPGRKKELERISGSTSVPKVFFNEILIGGSSELKTLDESGKLDEKVDFLITEAPLFEAPSPPLSGEDDVPSSGLPDEMAIIVRKMKESIVVKDRLHKVRRFTNCFLGSEAIDFLSEDQYLERPEVSLVLSLKRGSIARTQPIYDILYAAVEFARKLAEKHFFRHVTDENLFEDGNHLYRFLDDDPVVVSQCHNISRGISTLKPKPLAEIASRLRFLSGAIFEAYSYEDGHRVDYTSIHGSEEYLRIVEELQRVEISDSSREEKLAFFINLYNMMAIHAILVLGHPDGALERRKLFGEFKYVIGGSTYSLSAIQNGILRGNQRPPYNLKKPFGAKDTRSTVALPYPEPLIHFALVYGTRSGPALRCYTPGKIDEELLDAARNFLRNGGVVIDSSTKAVNASKILKWYSIDFGKNEVEVIKHVSNYLDPADSEVLLDLLAASELKVTYQPYDWGLNC 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02237 763 ProSiteProfiles Glutaredoxin domain profile. 264 361 - -
Vimu10g02237 763 SMART DEP_3 393 490 IPR000591 GO:0035556
Vimu10g02237 763 MobiDBLite consensus disorder prediction 1 22 - -
Vimu10g02237 763 SUPERFAMILY "Winged helix" DNA-binding domain 386 494 IPR036390 -
Vimu10g02237 763 Gene3D Glutaredoxin 271 356 - -
Vimu10g02237 763 MobiDBLite consensus disorder prediction 120 143 - -
Vimu10g02237 763 CDD DEP 385 487 - -
Vimu10g02237 763 MobiDBLite consensus disorder prediction 1 161 - -
Vimu10g02237 763 Pfam Glutaredoxin 276 332 IPR002109 -
Vimu10g02237 763 MobiDBLite consensus disorder prediction 103 117 - -
Vimu10g02237 763 SUPERFAMILY Thioredoxin-like 264 354 IPR036249 -
Vimu10g02237 763 ProSiteProfiles DEP domain profile. 393 490 IPR000591 GO:0035556
Vimu10g02237 763 MobiDBLite consensus disorder prediction 24 68 - -
Vimu10g02237 763 PANTHER ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE 40 763 - -
Vimu10g02237 763 Pfam Protein of unknown function, DUF547 565 691 IPR006869 -
Vimu10g02237 763 Gene3D - 384 495 IPR036388 -
Vimu10g02237 763 MobiDBLite consensus disorder prediction 77 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02237 Vimu-Chr10 32753436 32756680 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02237 - - gmx:100820242 1197.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02237 10 32753436 32756680 Vimu10g02237 10 32753436 32756680 ECH
Vimu1g01773 1 19226207 19227781 Vimu10g02237 10 32753436 32756680 PCT