Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01856 ATGGAGCACCCCCAATATAATGAACAACCTGAAACCGCCAACAAAGTCATCTTGGTGGAACTAAAGAAGAGATTGGACTCGGCCAAGCGAAGGTGGCCAGAAGACTTGCTAGAGATGGCAGGGGGTTCAAATTCAAAGAGGCATCCTGTCAATAGGGGCACTGATTCCATAAACACAGAGGGTATAATTGAAGAGAATAATCTGCAACCACAAAAGCAAGTGCAAGAACGTGTTACTGTTTTCGACCAACATTTCTATGATGGAATCCCATGCTTTGCCGATGTTTGCTTTCTCCATAAGTCAAGCTCAATCCCAAAGGTCTCAGAGATGAGTTTACTCTTGAGCAGAGCTGGCTCTATTGGATGTGGAAAGGTTTTGGATACCATTGGGAGCAGCATCACAAATTTAAATGCTGGTAGTGGGTTTACTTCTGGAGCTGCAATTAAGGGGAATGGAATTTCTATTTTGGCATTCGAGGTTGCAAACACAATTGTCAAAGGTTTTAATCTTCTGGAATCTCTATCCGCAGAAAGTATTAGGAATTTAAAAGAAAAGGTGCTTCTTTCAGAGGGTGTGCAAAATTTAATATCAGAAGATATGAATGAACTTCTTAGGATTGTTGCAGCAGACAAGAGGAAGGAGTTGAAAGTTTTTTCTAATGAGGTGATTCGTTTTGGAAATCGTTCGAAGGATCCTCAGTGGCACAATTTAGATCGTTACTTAGAAAAAATTAGCAGACAATTAAACACAGAAAGACTGTCAAGAGACGAGGCAGAATCAATAATGCAACGATTGATGACTTTGGTTCCATTTACAGTTAAATTGTACCATGAGTTAGATGCTTGGGATAAACTTCAACAACATTTTCAGCGTAAGTGTGAGTTGGAGCATCAAAGATGGAGTTTTTTAATAACCATGGGACAAGAGGTTCACACTGATCATGCAATCGTATGTCTCTATCATATAGGTGATGATGATCTTGCAGTCTTGAGCGCGGAAATTAAAAGCCGAAAAAAGAAGCAAATTAATCACTTAAAGAAAAAATCACTCTGGTCTAGAAATTTGGAGGAGGTTATGGAGAAGCTAGTAGATATTGTCCTTTTTTTGCATTTGGAGATAACCATCGTGTTTGGCAATACAGATTACCACGAACAATCAATTGGACACATGAACAATTGCCAAAGATTGGGCCCTGCAGGCCTTGCTTTGCATTATGCAAATATAGTGCTTCAAATTAATACTCTTGTAGCCAAATCAACCATGCCTGCTGCAAATACAAAGGATTCACTATATCAAAGCTTGCCTCCTAATATAAAATTAGTTCTACGTTCTAATTTACCATCCTTTCGTGTTGCAGAAGAGCTAAGTGTAGCCGATGTAAGAAGTGAGATAAAGAAAACCTTGCGTTGGTTGGTCCCCATGGCCACTAACACATCCAAAGCACATCATAGATTTGGTTGGCTTGGCCAGTGGGCAAACACAAGGTACGAGGTAAATAAAAAGAGCGGTTTAATGTGGATTGAGACATTCCACCATGCAGATAAAGACAAGGTGGAACATTATATTCTTGAAATTCTCTTATGGTTTCATCGCTTGGCCATCAGAAGATTGACTGACTATGATGCTATTGGTGACTAA 1638 0.3962 MEHPQYNEQPETANKVILVELKKRLDSAKRRWPEDLLEMAGGSNSKRHPVNRGTDSINTEGIIEENNLQPQKQVQERVTVFDQHFYDGIPCFADVCFLHKSSSIPKVSEMSLLLSRAGSIGCGKVLDTIGSSITNLNAGSGFTSGAAIKGNGISILAFEVANTIVKGFNLLESLSAESIRNLKEKVLLSEGVQNLISEDMNELLRIVAADKRKELKVFSNEVIRFGNRSKDPQWHNLDRYLEKISRQLNTERLSRDEAESIMQRLMTLVPFTVKLYHELDAWDKLQQHFQRKCELEHQRWSFLITMGQEVHTDHAIVCLYHIGDDDLAVLSAEIKSRKKKQINHLKKKSLWSRNLEEVMEKLVDIVLFLHLEITIVFGNTDYHEQSIGHMNNCQRLGPAGLALHYANIVLQINTLVAKSTMPAANTKDSLYQSLPPNIKLVLRSNLPSFRVAEELSVADVRSEIKKTLRWLVPMATNTSKAHHRFGWLGQWANTRYEVNKKSGLMWIETFHHADKDKVEHYILEILLWFHRLAIRRLTDYDAIGD 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01856 545 Pfam Domain of unknown function (DUF3475) 155 211 IPR021864 GO:0045927
Vimu10g01856 545 Pfam Protein of unknown function (DUF668) 395 479 IPR007700 GO:0045927
Vimu10g01856 545 PANTHER OS01G0873900 PROTEIN 51 535 IPR045021 GO:0045927
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01856 Vimu-Chr10 26526123 26536962 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01856 - - pvu:PHAVU_009G157000g 786.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04243 11 63866884 63874635 Vimu10g01856 10 26526123 26536962 PCT