Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01640 ATGGGAAACTGCTTCTCCGAAGTCACCGCAGGCCGCGCTGCCATCGGCGGCACCGCCGGCGATTTCCGTAGTCTTGCTGGCGCTCCAAACGACGCCGTCGAGAACTTCCTCAGGTCTCGCGGCCACCACGGTCTCTTTTCTCAGATCGAGTTGTCGTTTTCCGCTTCTGGCTTGGGTGATCGTGATGTGCTTTTCAAGAATAATCCGATGATGGTTCTTTATGCAAAAGGCAAAACTGGAGCACTTGAGGAAATTTGCCGTACAGAAGTTGTTCTGAATTCATCTAGTCCAACATGGATTACTAAACACACCCTCATTTATTATTTTGAGGTTGTTCAGGTTTTAGTGTTTCGTGTGTATGATGTTGACACTCAGTTTCACAATTTAGATATAAAGATGCTTGAGCTAGATGAGCAGCAATTTCTTGGTGAGGCTACATGTGTACTGTCTCAGATAATCACACAGCGTGATCAATCATTGACTATAGATCTACACACAGAAGATTCTTTGAGATCTACACTGCCCAAAAACTGCGGGAAGCTCCTGGTGCATGCTGAGGAGTGTGTTAGCTCAAAGACTGCAATAGAGATGGCGTGCAGGTGTTCAGATTTGGAATGCAAGGATCTCTTTTCAAGAAATGATCCCTTTTTATTGATATCAAAAGTTGCAGAAGGTGGTGTCCAAATTCCAATTTGCAAAACAGAAGTTATTAAGAATGATCTTAATCCAATATGGAAATCTGTGTTTGTGAATATCCAACAAGTAGGAAGCAAGGAGAGTATTTTGATAATTGAGTGCTATAACTATAATAACAATGGAAAACATGATTTAATTGGTAAAGTGCAGAGATCTCTGGCTGAGTTGGAGAACATTCATAATAATGGCCAAGGAGAAAATTTACTTTTGCCATCTTCTGGTGGACAAAACCATGACAATAAGGTGTTAAGGAGCCAACTATTTGTGGATAGATTTATTGAAAGTGTCCAATATACTTTCTTGGATTACTTGGCTGGGGGATTTGAATTGAACTTCATGGTGGCTGTTGACTTTACAGCTTCGAATGGAAATCCACGCCTTCCTGATTCTTTGCATTATATTGATCCTTCTGGACGGCCAAATGCATACCAGAGGGCAATTGTTGAGGTTGGGGAAGTGTTACAGTTTTATGATTCAGATAAACGATTTCCTACTTGGGGATTTGGGGCACGACCAATTGATGGTCCTGTTTCACATTGCTTCAACTTGAATGGAAGTAGTCATTATTGTGAGGTGGAAGGGATCCAAGGAATTATGATGGCTTACACAAGTGCCCTGCATAATGTATCTCTTGCAGGACCTACTCTTTTTGGACCTGTCATAAGCACCGCTGCACTGATTGCCAGCCAATCGGTAGCAAATGGTGGAAGAAAGTACTTTGTTTTGTTAATAATCACAGATGGAGTAGTGACAGATCTTCAAGAAACAAAAGATGCCATTGTTAAAGCATCTGATCTGCCTTTATCAATCCTCATTGTTGGGGTTGGAGGTGCTGATTTCAAAGAAATGGAGGTTTTAGATGCAGACAAGGGAGAGAGGCTTGAGAGTTCGTATGGACGCGTTGCTTCACGTGATATAGTCCAATTTGTTCCATTTCGGGAGGTTCAAAGTGGATTTTCAGTTGTTCAAGCACTTCTTGCAGAATTACCGACTCAATTTTTAACTTATGTGCGGAGCAGAGATATCCAACCAAACCTCTAG 1737 0.4191 MGNCFSEVTAGRAAIGGTAGDFRSLAGAPNDAVENFLRSRGHHGLFSQIELSFSASGLGDRDVLFKNNPMMVLYAKGKTGALEEICRTEVVLNSSSPTWITKHTLIYYFEVVQVLVFRVYDVDTQFHNLDIKMLELDEQQFLGEATCVLSQIITQRDQSLTIDLHTEDSLRSTLPKNCGKLLVHAEECVSSKTAIEMACRCSDLECKDLFSRNDPFLLISKVAEGGVQIPICKTEVIKNDLNPIWKSVFVNIQQVGSKESILIIECYNYNNNGKHDLIGKVQRSLAELENIHNNGQGENLLLPSSGGQNHDNKVLRSQLFVDRFIESVQYTFLDYLAGGFELNFMVAVDFTASNGNPRLPDSLHYIDPSGRPNAYQRAIVEVGEVLQFYDSDKRFPTWGFGARPIDGPVSHCFNLNGSSHYCEVEGIQGIMMAYTSALHNVSLAGPTLFGPVISTAALIASQSVANGGRKYFVLLIITDGVVTDLQETKDAIVKASDLPLSILIVGVGGADFKEMEVLDADKGERLESSYGRVASRDIVQFVPFREVQSGFSVVQALLAELPTQFLTYVRSRDIQPNL 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01640 578 FunFam Protein BONZAI 1 isoform A 195 314 - -
Vimu10g01640 578 Pfam Copine 362 576 IPR010734 -
Vimu10g01640 578 Gene3D C2 domain 52 194 IPR035892 -
Vimu10g01640 578 PANTHER COPINE 34 577 IPR045052 GO:0005544
Vimu10g01640 578 CDD vWA_copine_like 312 565 IPR010734 -
Vimu10g01640 578 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 54 165 IPR035892 -
Vimu10g01640 578 SUPERFAMILY vWA-like 342 524 IPR036465 -
Vimu10g01640 578 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 176 288 IPR035892 -
Vimu10g01640 578 FunFam Protein BONZAI 1 51 194 - -
Vimu10g01640 578 ProSiteProfiles C2 domain profile. 28 162 IPR000008 -
Vimu10g01640 578 CDD C2B_Copine 195 288 IPR037768 -
Vimu10g01640 578 ProSiteProfiles C2 domain profile. 177 302 IPR000008 -
Vimu10g01640 578 Pfam C2 domain 200 292 IPR000008 -
Vimu10g01640 578 Pfam C2 domain 54 159 IPR000008 -
Vimu10g01640 578 CDD C2A_Copine 47 172 - -
Vimu10g01640 578 SMART C2_3c 198 297 IPR000008 -
Vimu10g01640 578 SMART C2_3c 48 161 IPR000008 -
Vimu10g01640 578 ProSiteProfiles VWFA domain profile. 343 557 IPR002035 -
Vimu10g01640 578 Gene3D C2 domain 195 314 IPR035892 -
Vimu10g01640 578 SMART VWA_4 341 538 IPR002035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01640 Vimu-Chr10 21004808 21015055 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01640 - - gmx:100799074 1054.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01640 10 21004808 21015055 Vimu10g01640 10 21004808 21015055 ECH
Vimu11g04298 11 64335636 64337039 Vimu10g01640 10 21004808 21015055 PCT