Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01345 ATGAGCGTGCACTTCCACTACTACCCTTTCCCACGGTTGGCTTATGGTTGCAACTATTACGCTTCTTATGCAACAAAACGCACTCTCTCCAACCACCGTCGTGTTCCACCGCACTCTTCCAGCTTCTCCGCCATCACCAATCTTTTCTTCCAAAACCCTAATTTCTTCACGGGGAACACACTCTTCCTTAGGATGAAGCGATTTTGCCCTGTGAGTGGCACGAGTAAGATCAAAGCGATGGTGGAGAGGTTGCAGCGATGTGGAGTGATCACATCAAGTAAAGTGGCTGAAGTAATGGAGAAAGTTGACAGAGCGTTGTTTGTACCTGATGGAGCTGAGCCTTATGATGACAGTCCCATGGCCATAGGATACAATGCCACTATATCTGCCCCACATATGCATGCCATGTGTCTTCAGTTGCTTGAGGATAAGTTGCAGCCTGGGATGCGTGCTTTGGACGTGGGCTCTGGAACGGGGTATCTGACGGCGTGCTTTGCCTTGATGGTTGGACCCCAAGGCCGTGCTGTTGGTGTAGAGCATATTCCTGAATTGGTTTCTTCTTCAATTGAGAATATTCAGAAAAGTGCTTCTGCCACACAATTGACAGATGGATCCCTTTCTATTCATGCTGGTGATGGGAGGGAAGGTTGGCCAGAGTTTGCACCTTATGATGCCATTCACGTTGGAGCAGCAGCACCAGAAATTCCCCAAGCACTAATTGACCAGCTGAAGGCAGGAGGTAGAATGGTGATTCCTGTTGGAAACATATTTCAAGATTTAAAGGTGGTGGATAAGAATTCTGATGGTTCTATCAGTGTCCGGACTGAGACGTCTGTTCGTTACGTTCCCCTCACTAGTCGAGAAGCTCAACTGCGAACTTACTAA 885 0.4791 MSVHFHYYPFPRLAYGCNYYASYATKRTLSNHRRVPPHSSSFSAITNLFFQNPNFFTGNTLFLRMKRFCPVSGTSKIKAMVERLQRCGVITSSKVAEVMEKVDRALFVPDGAEPYDDSPMAIGYNATISAPHMHAMCLQLLEDKLQPGMRALDVGSGTGYLTACFALMVGPQGRAVGVEHIPELVSSSIENIQKSASATQLTDGSLSIHAGDGREGWPEFAPYDAIHVGAAAPEIPQALIDQLKAGGRMVIPVGNIFQDLKVVDKNSDGSISVRTETSVRYVPLTSREAQLRTY 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01345 294 PANTHER PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE 76 292 IPR000682 GO:0004719|GO:0036211
Vimu10g01345 294 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 77 262 IPR029063 -
Vimu10g01345 294 CDD AdoMet_MTases 150 253 - -
Vimu10g01345 294 ProSitePatterns Protein-L-isoaspartate(D-aspartate) O-methyltransferase signature. 211 226 IPR000682 GO:0004719|GO:0036211
Vimu10g01345 294 NCBIfam protein-L-isoaspartate O-methyltransferase 75 290 IPR000682 GO:0004719|GO:0036211
Vimu10g01345 294 Gene3D Vaccinia Virus protein VP39 71 294 IPR029063 -
Vimu10g01345 294 Pfam Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 78 288 - -
Vimu10g01345 294 FunFam Protein-L-isoaspartate O-methyltransferase 70 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01345 Vimu-Chr10 14138787 14141043 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01345 K00573 - gmx:100810913 506.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01345 10 14138787 14141043 Vimu10g01345 10 14138787 14141043 ECH
Vimu7g00576 7 5863528 5865182 Vimu10g01345 10 14138787 14141043 PCT