Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01289 ATGAAGGCAACTCTAAGATACTTAGCAGGAATGGCAGGCCCTAGTGGTTTTGGCTCAAACTCAACCGCTGAACAAGTCACTGAAGATTCTTCTTGCTTCCTTCCTTCAACTCTAACAGCTCTCATCACTGGTGATGAGAGATTAACTTTGAAGCCTGCAAACTCTCTCACATCACACGAGTGTGCCAATTTAGATATGCTTGGTGTGGTTCTTTTTAGCTGCAGAAAGATGAGTTTAAATAACAAAGTTGTTACTGATTTTGAACTTTTAACTGAAGGGGCAAGTTCTGGAATTGGAGCAGAAACAGCCAGAGTGTTAGTAAAGAGAGGAGTGAGAGTTGTGATCGGTGCAAGGGACTTGAAGAAGGCCATGGAAGTGAAAAAGAACATAGAAAAGGAGAGTCCAAAGGCTGAGGTTGTTCTGTTGGAGATTGATCTTAGCTCTTTTGGTTCTGTACAGAGATTTTGTTCCGAGTTCTTAGCTTTAGAACTTCCCCTTAATATTCTCATAAACAATGCAGGGATATTTTCTCAAAACTTGGAGTTCTCTGAGGATAAAATTGAGACCACATTTGCTACAAATTACTTAGGTCATTTTTTGTTAACAGAGATTTTATTAGAAAAAATGATAGAGACGGCTGAGAAGACAGGTATTGAAGGAAGAATAATAAACGTTTCTTCTGTCATACATAGCTGGGTGAAGAAAGATGCTTTTCGTTTCAACGACATACTCAGTGGAAAAAAATATAATGGCACACGCGCTTATGCTCAGTCAAAATTGGCAAATATTTTGCATGCCAAGGAAATAGCCAAGCAACTCAAGGCAAGGAATGCAAGAGTAACTATCAATGCAGCACATCCAGGCATTGTGAAGACAGGAATTATTAGAGCTCACAAGGGCTTATTAACGGATTCCCTATTTTTTATCGCATCAAAGTTACTCAAAACAACATCACAGGTGAGCAAACAAACAAGCTCGATTAAATACACTTACGTGCAGTGA 1002 0.3922 MKATLRYLAGMAGPSGFGSNSTAEQVTEDSSCFLPSTLTALITGDERLTLKPANSLTSHECANLDMLGVVLFSCRKMSLNNKVVTDFELLTEGASSGIGAETARVLVKRGVRVVIGARDLKKAMEVKKNIEKESPKAEVVLLEIDLSSFGSVQRFCSEFLALELPLNILINNAGIFSQNLEFSEDKIETTFATNYLGHFLLTEILLEKMIETAEKTGIEGRIINVSSVIHSWVKKDAFRFNDILSGKKYNGTRAYAQSKLANILHAKEIAKQLKARNARVTINAAHPGIVKTGIIRAHKGLLTDSLFFIASKLLKTTSQVSKQTSSIKYTYVQ 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01289 333 Pfam short chain dehydrogenase 93 229 IPR002347 -
Vimu10g01289 333 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 220 228 IPR002347 -
Vimu10g01289 333 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 255 274 IPR002347 -
Vimu10g01289 333 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 164 175 IPR002347 -
Vimu10g01289 333 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 92 301 IPR036291 -
Vimu10g01289 333 PRINTS Glucose/ribitol dehydrogenase family signature 164 175 IPR002347 -
Vimu10g01289 333 PRINTS Glucose/ribitol dehydrogenase family signature 88 105 IPR002347 -
Vimu10g01289 333 PRINTS Glucose/ribitol dehydrogenase family signature 214 230 IPR002347 -
Vimu10g01289 333 PRINTS Glucose/ribitol dehydrogenase family signature 278 295 IPR002347 -
Vimu10g01289 333 PRINTS Glucose/ribitol dehydrogenase family signature 255 274 IPR002347 -
Vimu10g01289 333 PANTHER RETINOL DEHYDROGENASE 14 323 - -
Vimu10g01289 333 Gene3D - 78 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01289 Vimu-Chr10 13179583 13183777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01289 79 297 Acyl Lipid Metabolism Gene Families AT3G55290 30.357 4.21e-12 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01289 - - gmx:100801384 461.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01289 10 13179583 13183777 Vimu10g01289 10 13179583 13183777 ECH
Vimu7g00632 7 6347611 6349779 Vimu10g01289 10 13179583 13183777 PCT