Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01288 ATGGCGTCAATTTGCGACACCGATATCCCGCTTCAACTGAAGAACATCGACGCTTTCTTCGCTTCTTACAGAAACTCCCTTCAATCCATCACAGCCACCGCAATCAAAACCGCTCGATCTCAATCTCAACTGACAGAGGTTAAAGCTAAACTGAGGGAGGTTGAGGATGAATTGGTAAAGGCGCTGGCAGTTAAGACTCGGAGAGAGGCGAAGAGAATGTCTCTAAAGGATTCTATTGCTTCTGTGAAGGAACGAGTTGAAGTTATGAAGACAAAGATTCAGAGGCAGAGAAGCAAGTGCGAAGAATGTGCTTCTGTTGTATCGCAACACCGGCTTGGTAGTAATCACAAATCAAATGAAAGCAATGAACTTAAAGATGAAGCCCAGGAAGCCATAACTTGGTACAATAGGAACGTTGGTTTTCATGTTGAAGGAGGACATGGGGTTAAATTCACTTTCAAGAATATTGATGAAAACAACCCAAATGAAGAGTTCTGTTTTACCATCCGTCATGAAGATGACATTCAGATTATTATTTGCAGCTGTGACTGCTGGAAACCAGTGCTGACAATTGCTTCCATTCAAGGGATGGGGGGACGGGTGGTTCTGGCCCTTTGTTCAAAACCAGTGCTGAATGAGCTGGTTTTGGTCAAACTTGTAAACTATTTCCAATTCCACAGGTTCCTCCAGGTTGAAATTGGTGATGTTGCAGAGTAG 717 0.4351 MASICDTDIPLQLKNIDAFFASYRNSLQSITATAIKTARSQSQLTEVKAKLREVEDELVKALAVKTRREAKRMSLKDSIASVKERVEVMKTKIQRQRSKCEECASVVSQHRLGSNHKSNESNELKDEAQEAITWYNRNVGFHVEGGHGVKFTFKNIDENNPNEEFCFTIRHEDDIQIIICSCDCWKPVLTIASIQGMGGRVVLALCSKPVLNELVLVKLVNYFQFHRFLQVEIGDVAE 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01288 238 Coils Coil 79 99 - -
Vimu10g01288 238 Gene3D Chromosome segregation protein Spc25 119 190 - -
Vimu10g01288 238 Coils Coil 37 64 - -
Vimu10g01288 238 PANTHER KINETOCHORE PROTEIN SPC25-RELATED 5 183 IPR045143 GO:0007059|GO:0031262
Vimu10g01288 238 Pfam Chromosome segregation protein Spc25 145 181 IPR013255 GO:0007059|GO:0031262
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01288 Vimu-Chr10 13169761 13172395 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01288 K11550 - gmx:100804876 247.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01288 10 13169761 13172395 Vimu10g01288 10 13169761 13172395 ECH
Vimu7g00633 7 6352532 6355423 Vimu10g01288 10 13169761 13172395 PCT