Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01258 ATGAATTCGTTGTTGAGTGCCAAGGCATGCGTGGGTGTGCGGTCACCGGTTATAGCGAACTCCGAGGAAAGGAGTACGAGGAGGATGATGCAAAACGTGAATTGTAGGAACAGTAGGAATTGGAGGAATGTGGCTGTGTCGTGCGGTTCGGAGAAGAACGGGAACGATGGAATTGGCGCGAGTGAAGGGTTGGATTCGGGGTCGTTTTTGTCTCCGAGTCACAATTACGCGATCTTGAAGCACCGGATGGAGATAGCGGCAAAGTCCGAGTATTATGAAGAGGCTGCAAGGCTTCGTGACTCGCTCAAATGCTTCGAGGACGAAGTTCCTGTTCTGCGTCTGCGGAGGCTGTTGAAAGAAGCTGTTGCTGATGAGAGATTTCAGGATGCAGCTATATATCGTGATCAGCTCAAAGAAATTGCTCCACATTCTCTCTTAAAATGTTCAAGTGATTCTACAACCTTGGGAATTCGGGTACAAGTTAAGAGTGCATATTTAGAGGGAAGAAGTCAACCAACAGAAGAGGTATATTTCTTTGAATATAAAATAAGAATTACCAATAACACAAACCGCCCTGTTCAACTTCTGAGAAGGCACTGGATTATAACTGATGCTAATGGAAAAACTGAAAATTTCTGGGGAATTGGCGTTGGTGGTGAACAGCCAGCTATATTTCCTAGAAGTAGTTTTGAATTCTCTTCTACATGCCCTTTAAACGCACAAAATGGTAGAATGGAAGGTGACTTTGAGCTGATACATGTTGATCGAGTAGGTCCAAGAGCATTTAACGTGGCTGTTGCCCCATTTTCTCTCTCTCTACTTGGAGATGATGATGAGGATGTTGAAACTATCTGA 855 0.4444 MNSLLSAKACVGVRSPVIANSEERSTRRMMQNVNCRNSRNWRNVAVSCGSEKNGNDGIGASEGLDSGSFLSPSHNYAILKHRMEIAAKSEYYEEAARLRDSLKCFEDEVPVLRLRRLLKEAVADERFQDAAIYRDQLKEIAPHSLLKCSSDSTTLGIRVQVKSAYLEGRSQPTEEVYFFEYKIRITNNTNRPVQLLRRHWIITDANGKTENFWGIGVGGEQPAIFPRSSFEFSSTCPLNAQNGRMEGDFELIHVDRVGPRAFNVAVAPFSLSLLGDDDEDVETI 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01258 284 SUPERFAMILY ApaG-like 153 272 IPR036767 -
Vimu10g01258 284 Pfam ApaG domain 169 251 IPR007474 -
Vimu10g01258 284 ProSiteProfiles UVR domain profile. 108 143 IPR001943 GO:0005515
Vimu10g01258 284 Gene3D ApaG domain 147 278 IPR036767 -
Vimu10g01258 284 Pfam UvrB/uvrC motif 113 140 IPR001943 GO:0005515
Vimu10g01258 284 Coils Coil 88 108 - -
Vimu10g01258 284 ProSiteProfiles ApaG domain profile. 151 278 IPR007474 -
Vimu10g01258 284 PANTHER OS05G0170800 PROTEIN 21 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01258 Vimu-Chr10 12681893 12683543 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01258 - K06195 gmx:100799029 447.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01258 10 12681893 12683543 Vimu10g01258 10 12681893 12683543 ECH
Vimu7g00657 7 6583041 6588787 Vimu10g01258 10 12681893 12683543 PCT