Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01228 ATGGAACAAATTACACTCTCTCAACACGACCATGAAGATTCGCTTTTTTCAGATTGCCAGAGCAGTGTTTCTGGCACCGGAATGGTGCCGCCAGAACACTCTTCTTTAGTTAGGCTTCCAGAAGGTGATGTGCTTCACGACCTTATCAAGAGACGCTTCATTCGTGGCCTCGGCATGCTCGGCCCCAAAACAGAGGTTCTTTCCGTTCACCGAAACTCTTGTTCCGGCGTTGTTTCGCAGGCGCGGCTCCAGTCCTTTCAGCTTTATGCTAGGGCCGTGGCGGAGCTGCGTCAAGGGAATGCCAACGTCAAGTACGCTTGGTACGGAACTCGCGGCGAAGACGACGTAAACGACATTGTTTCTCATGGGTTTGTCCACGACCACGGTCCTAAACTTCTTCTCTCCCCCGATGACGCTCCTCTCCAAAGTGTTAGAGAGTGTGTGGTTGGGAAAGACGGTGTGAGGCACGCACTACTTTGCCGCGTTATTCTAGGGAGAATGGAGCTTGTTGACGATGGCAGCGAACAATGTTATCCAAGTTCCGAGAAGTATGATTCTGGGGTGGATAGTTTTTCAGCTCCCAGCAAGTATATAATTTGGAGTAATCGCATGAACACTCATGTCTTGCCTGCATATGTTGTAAGCTTCAGGGTTCCTCCTTTCAAAGGCATTGAGAAGAGTGAAGAAGAATTTTTGAGACCTACTTCGCCTTGGATGCCATTCCCAACTCTGATTTCTGCACTTTCAATGGTTTTGTCTGCTCGTGATATTGCTCTAATCTCTAAGTTCTACAAAGATAAAAGAGAGAAGAAGATTTCACGACATGAACTTATAAGAAGAGTGAGACAAATAGCAGGTGACAAGTTGCTGTTTGCAGTCATCAAATCTTTCAGAGAAAAGAAGAAACAAAGGTTTCTATACAAACAAGGTCAAAGAATCGCTTAG 945 0.4635 MEQITLSQHDHEDSLFSDCQSSVSGTGMVPPEHSSLVRLPEGDVLHDLIKRRFIRGLGMLGPKTEVLSVHRNSCSGVVSQARLQSFQLYARAVAELRQGNANVKYAWYGTRGEDDVNDIVSHGFVHDHGPKLLLSPDDAPLQSVRECVVGKDGVRHALLCRVILGRMELVDDGSEQCYPSSEKYDSGVDSFSAPSKYIIWSNRMNTHVLPAYVVSFRVPPFKGIEKSEEEFLRPTSPWMPFPTLISALSMVLSARDIALISKFYKDKREKKISRHELIRRVRQIAGDKLLFAVIKSFREKKKQRFLYKQGQRIA 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01228 314 SUPERFAMILY ADP-ribosylation 36 218 - -
Vimu10g01228 314 ProSiteProfiles PARP catalytic domain profile. 21 236 IPR012317 GO:0003950
Vimu10g01228 314 ProSiteProfiles RST domain profile. 232 303 IPR022003 -
Vimu10g01228 314 MobiDBLite consensus disorder prediction 1 16 - -
Vimu10g01228 314 PANTHER INACTIVE POLY [ADP-RIBOSE] POLYMERASE SRO4-RELATED 28 300 IPR044964 -
Vimu10g01228 314 MobiDBLite consensus disorder prediction 1 34 - -
Vimu10g01228 314 Gene3D - 34 218 - -
Vimu10g01228 314 Pfam RCD1-SRO-TAF4 (RST) plant domain 233 298 IPR022003 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01228 Vimu-Chr10 12221988 12224459 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01228 - - vra:106760244 588.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01228 10 12221988 12224459 Vimu10g01228 10 12221988 12224459 ECH
Vimu7g00668 7 6684336 6687050 Vimu10g01228 10 12221988 12224459 PCT