Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01172 ATGGCAGGAGGAGGAGGTCCAGCAAAATCAGATGAGCCACAGCCTCACCCTCCAAAGGATCAGCTTCCCAATATTTCTTACTGCATTACTAGTCCTCCTCCATGGCCCGAGGCCATACTTCTTGGTTTTCAACATTTTCTTGTGATGCTCGGCACAACAGTGCTGATTCCCACTGCTCTTGTTCCCCAGATGGGAGGTGGCAATAATGAGAAGGCCAGAGTTATTGAAACGCTACTTTTTGTAGCTGGTATTAACACATTGTTGCAAACATTGTTTGGAACTCGACTGCCTGCAGTTATTGGAGGGTCTTACACCTTTGTTCCAACCACAATCTCTATTATCCTCGCGGGCCGATTCAGTGGTGAACCAGATCCTATAGAGAAATTTAAGAGGATAATGAGGTCAATCCAGGGTGCTCTTATTGTTGCTTCAACTCTTCAAATAGTACTGGGCTTCAGTGGGCTTTGGAGGAATGTTGCAAGGTTCTTAAGTCCACTTTCATCAGTTCCTTTGGTATCTCTTGTTGGTTTTGGGCTGTACGAGTTAGGGTTCCCTGGGGTTGCTAAATGTGTAGAGATCGGACTGCCTCAGCTTATATTGATCGTGTTTGTTTCACAGTATGTGCCTCACGTGCTACATTCGGGGAAAAATATCTTTGACAGATTTGCTGTGATATTTACTGTTGTAATTGTGTGGATATATGCTCATCTACTTACTGTGGGAGGTGCCTATAATGATGCTCCACCTAAAACTCAAATATCCTGCCGCACTGATCGTGCTGGACTTATAGATTCTGCTCCTTGGATAAGAATTCCATATCCCTTTCAATGGGGAGCACCTTCCTTTGATGCAGGTGAAGCCTTTGCCATGATGATGGCAGCTTTTGTTGCTCTTGTAGAGTCCAGTGGAGCTTTCATTGCTGTTTATAGGTATGCAAGTGCAACACCATTACCGCCATCTATTCTGAGCAGGGGTATTGGATGGCAGGGAGTTGGCATTCTGTTATCAGGATTGTTTGGAACAGTCAATGGATCTTCTGTGTCCGTAGAAAATGCAGGTCTTTTGGCTTTGACACGAGTTGGAAGTAGAAGAGTGGTGCAAATATCTGCTGGATTTATGATTTTCTTTTCAATTCTTGGAAAATTTGGAGCAGTTTTTGCCTCCATCCCACCTGCCATTATAGCTGCCCTCTACTGCTTGTTCTTTGCTTATGTTGGTGCTGGTGGTCTCAGTTTTCTTCAGTTCTGCAACCTCAACAGTTTTAGAACAAAATTCATTTTAGGCTTCTCAATCTTCTTGGGCTTGTCTATACCACAGTACTTCAATGAGTACACAGCCATTAATGGTTATGGTCCAGTCAACACAGGCGCAAGATGGTTCAATGATATTATCAACGTGCCATTCCAATCAAAACCATTTGTTGCGGGTGTTGTGGCATATTTTCTGGACAACACTTTATTTAAGAGAGAAGGAAGCATTAGGAAGGACAGAGGGAAACATTGGTGGGACAAGTACAAGTCCTTCAAGGGTGACACAAGAAGTGAGGAGTTCTATTCACTGCCTTTCAATCTAAACAAGTACTTCCCCTCTGTTTAA 1596 0.4355 MAGGGGPAKSDEPQPHPPKDQLPNISYCITSPPPWPEAILLGFQHFLVMLGTTVLIPTALVPQMGGGNNEKARVIETLLFVAGINTLLQTLFGTRLPAVIGGSYTFVPTTISIILAGRFSGEPDPIEKFKRIMRSIQGALIVASTLQIVLGFSGLWRNVARFLSPLSSVPLVSLVGFGLYELGFPGVAKCVEIGLPQLILIVFVSQYVPHVLHSGKNIFDRFAVIFTVVIVWIYAHLLTVGGAYNDAPPKTQISCRTDRAGLIDSAPWIRIPYPFQWGAPSFDAGEAFAMMMAAFVALVESSGAFIAVYRYASATPLPPSILSRGIGWQGVGILLSGLFGTVNGSSVSVENAGLLALTRVGSRRVVQISAGFMIFFSILGKFGAVFASIPPAIIAALYCLFFAYVGAGGLSFLQFCNLNSFRTKFILGFSIFLGLSIPQYFNEYTAINGYGPVNTGARWFNDIINVPFQSKPFVAGVVAYFLDNTLFKREGSIRKDRGKHWWDKYKSFKGDTRSEEFYSLPFNLNKYFPSV 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01172 531 NCBIfam purine/pyrimidine permease 39 437 - -
Vimu10g01172 531 PANTHER XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBER 8 529 - -
Vimu10g01172 531 MobiDBLite consensus disorder prediction 1 25 - -
Vimu10g01172 531 Pfam Permease family 37 441 IPR006043 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01172 Vimu-Chr10 11399846 11405313 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01172 7 531 Organic Solute Cotransporters AT5G49990 79.238 0.0 847
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01172 - - gmx:100812585 1021.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01172 10 11399846 11405313 Vimu10g01172 10 11399846 11405313 ECH
Vimu7g03770 7 33243536 33247704 Vimu10g01172 10 11399846 11405313 PCT