Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01140 TTGAATGTGCGTCCATACCGCGAAACCAACCGTCATCGGCGCTCCAGCAATGTGGCCGGAAACCGAATAATCGCCGCCGTTCCTCATCCAATTCCGGCCACAACTTCAACACAAGATTCAACAATGGCTCACGCCACAAAGCAAACGCAGAACACAAAGCAGAGGGTCCTCACGTGCTTGACGAAGCTATCGGACCGCGATACACAGGCTGCAGGAGCCACCGAACTCGAGTCCATCGCTCGTAGCCTGGACCCGCACTCTGTTCCCGTGTTCCTCTCCTGCATTCACTCCACCGACGCCTCCGACAAAACCCCTGTCCGCAAACAATGTGTGCACATCGTGGCAACGCTCTCCCACGCGCATGGCGACGCGCTCTCGCCTTTCCTCTCCAGAATCCTAACCAACCTCGTGCGCCGCCTCCGCGACCCCGACTCCTCCGTGCGGGCCGCCTGCGCCGACTCCGTCGGCGCGCTGTCGGCGCGTGTCACTCGGCAGCCGTTCTCCTCCTTCCTGAAGCCGCTGACGGAGGCGCTCTTCACAGAGCAGGACCCCAACTCGCAGGCAGCCGCTGCGCTATGTCTCGCCTCCGCCGTCGACGGAGCTCCGGATCCGGACCCCGCCAGGCTTGCCAGGCTGCTCCCGAGGTTTGAGAAGCTCCTCAAGAGTAAGGTGTTCCGGGCCAAGACCGCTCTGCTGGCGCTCGTCGGAAGTGTCGTGGAGGCGGGCGGGGCTTCGAGTCGCAGCGCGTTGAGGAATTTGGTTCCCTGCCTTGTGGAGGCGCTTGGCAGCGTGGACTGGGCCACGAGGAAGGGCGCGGCGGAGGCATTGAGGAGGCTTGCCGTCGCCGAGAGGGACCTCTTGTCGGAGTTCAAGGGTGGATGTTTCAGAGCGCTCGAGGATCGACGATTTGATAAGGTAAAGTTGGTTCGGGAAGTTGTGAATCAGATGTTGGAGGCGTGGAAGCAGATTCCTGATGTCTCGGATGAGTTCTCTCCACCTCCTCATTCTCAGTCTTCTGCTAAAGGTATTGTGGTTGATGTAGAGAATGCAAGTGATGGGCGCTATCCTCCTGTTTCTCAAAATTCATGTAGTCCAGGTTCTGTTATGAGTAAATTGAGGAAGAAATCAAGCCCAATTAGCAAATCAACTCCACCGGATAGATCTCTTGCCAGAAATGCTAAAAGGTTGAGTGCCTTAAGCGGTGACCGGATGAATTCAGGTGTTTTGCAGAAACTAAACCATAACCATTGGGATGTTAGAATTGCTGTGTCAAATCTTCCTGATCGTGGTGAATGTCAGCCAAGGGATGAAAATGTATTGGAAAGCAGCAAAAAGGATAAAAGCAGATTTTTCAAGTCAGAAACAAAACGGGCTCTATTTGAGAAAAATGCTGATGACAAGATGCATAAATTTGGTGGGTCAAAAGCTGGATCTCGCGTGGTTCCTTGTTCAGAAGAGAATCAAGACTCAGATCCTGTCTGTAATGTAGCGAAGGATCTTACTAGGAATGACAAAGAGAGTGAGGAATTATCGTTGATTCGTGCCCAGTTAGTTCAAATTGAGAAGCAGCAGTCAAGTCTGTTTGATCTTCTACAGAAATTCATTGGGAGCTCTGAAAATGGAATGCGTTCTTTAGAGACTCGTGTGCATGGCCTCGAGTTGGCATTGGATGATATATCTTATGATTTGGCTGTAACTTGTGGAAGGATAACTAAATCTGATGCTCCCAAGAATACATGCTGTCTGCTACCTGGTGCCGAATTTTTAAGCTCCAAATTCTGGAAGAAAACACAGATCAGGTATTCATCCAACCGGTTCTCCAGAACTGGTAGCACTCCATTACTAGCTTCCAGTCATTACAGAGCAAATAGGGACACCGAATCTAGTACGGCAAGCCACAGGTTGAGGGTCCGTGGTGATGGAAGCTTCATCACAAATCCCCTGGCAGAGATTAAAATTAATTCAAGGGAAATTTCGGGCTCTGCAAGATCAGAGCTAGCTTGA 2004 0.5185 MNVRPYRETNRHRRSSNVAGNRIIAAVPHPIPATTSTQDSTMAHATKQTQNTKQRVLTCLTKLSDRDTQAAGATELESIARSLDPHSVPVFLSCIHSTDASDKTPVRKQCVHIVATLSHAHGDALSPFLSRILTNLVRRLRDPDSSVRAACADSVGALSARVTRQPFSSFLKPLTEALFTEQDPNSQAAAALCLASAVDGAPDPDPARLARLLPRFEKLLKSKVFRAKTALLALVGSVVEAGGASSRSALRNLVPCLVEALGSVDWATRKGAAEALRRLAVAERDLLSEFKGGCFRALEDRRFDKVKLVREVVNQMLEAWKQIPDVSDEFSPPPHSQSSAKGIVVDVENASDGRYPPVSQNSCSPGSVMSKLRKKSSPISKSTPPDRSLARNAKRLSALSGDRMNSGVLQKLNHNHWDVRIAVSNLPDRGECQPRDENVLESSKKDKSRFFKSETKRALFEKNADDKMHKFGGSKAGSRVVPCSEENQDSDPVCNVAKDLTRNDKESEELSLIRAQLVQIEKQQSSLFDLLQKFIGSSENGMRSLETRVHGLELALDDISYDLAVTCGRITKSDAPKNTCCLLPGAEFLSSKFWKKTQIRYSSNRFSRTGSTPLLASSHYRANRDTESSTASHRLRVRGDGSFITNPLAEIKINSREISGSARSELA 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01140 667 PANTHER MICROTUBULE-ASSOCIATED PROTEIN TORTIFOLIA1 46 633 IPR033337 GO:0005874|GO:0008017
Vimu10g01140 667 MobiDBLite consensus disorder prediction 354 387 - -
Vimu10g01140 667 Coils Coil 503 523 - -
Vimu10g01140 667 ProSiteProfiles HEAT repeat profile. 132 170 IPR021133 -
Vimu10g01140 667 Gene3D - 40 426 IPR011989 -
Vimu10g01140 667 SMART TOG_3 75 312 IPR034085 -
Vimu10g01140 667 FunFam TORTIFOLIA1-like protein 3 isoform A 43 406 - -
Vimu10g01140 667 Pfam HEAT repeat 132 159 IPR000357 GO:0005515
Vimu10g01140 667 SUPERFAMILY ARM repeat 52 422 IPR016024 -
Vimu10g01140 667 MobiDBLite consensus disorder prediction 350 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01140 Vimu-Chr10 10985418 10990488 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01140 - - gmx:100778310 1013.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01140 10 10985418 10990488 Vimu10g01140 10 10985418 10990488 ECH
Vimu7g00725 7 7252953 7255535 Vimu10g01140 10 10985418 10990488 PCT