Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01134 ATGAAGCGAAACCTTCAAACGTTGTTTATGTTAACACGAAAACGATCGATTCAGTTTCTAATCGCTGCCTTTTTTTTCTACCTCGTACTCGTCACACTCGAAATCCCTCTCGTTTTCAAAGCCGACTTCACCACCGTCGCCACGCGCACTCACAAGCTCCTCAGCGAGGAGGACTCGCTACTCAAGGACTCCCCCGCGCGTCCTTTGAAAACGGTTTCCAACGCTCACTCGCCGAGTCAACTCGCTCGCCGCAGCGTGATTTCGGGGCTGGTCCTGAACGACGCCGTGTTCGAATCCAACGCCAACGATGGGTCCTTGGAGCTCTACAAGCTCGTAAAGCATGCGCGCCAGATGGGACGGAGACTCTGGGCGGACCTTGAATCTGGAAATTTGCGGACCGTTGTGTCGAAGCCCGAGAACCGGTCCAGTTCGTGTCCCGGTTCGGTTTCTCTGTCAGGTAAGGACGCATTGGGCGTCGTGCCGCTGCCTTGTGGGCTCACATTGGGGTCACACGTGACGATCGTTGGGAAGCCGTTGGCGGCGCGGCCGGATTTCGAACCGAATATAGCGGTTGTGAAGGAGAATGAACCGGTGATGGTGTCACAGTTCGTGGTGGAGTTGCAGGGGCTGAAGACGGTGGACGGTGAAGAGCCTCCTAGGGTTTTTCACTTCAATCCGAGGTTGAAGGGGGATTGGAGTGGGAAGCCTGTGATTGAACTCAACACATGTTATCGCATGCAATGGGGTTCCGCTCTCAGGTGCGACGGTTGGAAATCCAAGGCCGATGATGATACCGTTGATAGGATGGTGAAGTGCGAGAAGTGGATTAGAGATGATGAACACCACTTAGAGGAGTCTAAGTCGACGTGGTGGTTGAAAAGACTTATAGGGCGCACCAAGAAAGTAAACGTTGACTGGCCATTCCCATTTTCTGAGGGGAAGCTTTTTGTTCTTACTATTAGTGCTGGGTTGGAGGGGTATCATGTTACCGTTGATGGGAGACATGTAGCATCTTTTCCTTATCGTGCTGGTTTTACTCTTGAGGATGCCACTGGGCTTTCGTTGGCTGGAGACATTGATGTTCACTCTATATTTGCAGCGTCTTTGCCTTCATCGCATCCCAGTTTTTCCCCACAGCGGCATCTTGAATTTTCCACCAGGTGGCGTGCCCAGCCACTTCCCGACACTGGCGTAGAATTGTTCGTTGGTATCCTCTCAGCTGGAAACCATTTTTCTGAGCGGATGGCTGTGAGGAAGTCATGGATGCAGCATAGGCTTGTTAAATCTGGAGCAGTGGTTGCTCGATTCTTTGTTGCACTGCATGCAAGACGGGAAATTAATGTAGAGTTGAAGAAGGAAGCAGAATATTTTGGTGATATTGTTATAGTGCCCTACTTAGATAACTATGATCTTGTTGTCTTGAAAACAGTGGCCATATGTGAATATGGGGTTCATACGGTTTCTGCTAAGTATATCATGAAAGGGGATGATGATACTTTTGTTAGAGTGGATGCTGTTATCCGTGAAGCAAGGAAGGTTCCAGATGATACCAGTTTTTATATCGGTAACATAAATTACTATCATAAACCCTTGCGATATGGGAAATGGGCAGTTACATATGAAGAATGGCCAGAAGAGGATTACCCACCCTATGCTAATGGCCCGGGTTATATTTTGTCATCAGATATTGCACGATATATTGTATCTGAATTTGAAATGCATAAACTAAGGTTGTTTAAGATGGAAGATGTGAGTATGGGAATGTGGGTAGAGCAATTTAACCGCTCAAAAACTGTACAGTATTCTCATAGCCTGAACTTCTGCCAATTTGGTTGCATAGAAGACTATTACACAGCCCATTACCAATCGCCTAGGCAGATGATGTGTCTGTGGGATAAACTGCAAAGGCAGACAAGGCCTCAGTGCTGTGACATCAGATGA 1941 0.4812 MKRNLQTLFMLTRKRSIQFLIAAFFFYLVLVTLEIPLVFKADFTTVATRTHKLLSEEDSLLKDSPARPLKTVSNAHSPSQLARRSVISGLVLNDAVFESNANDGSLELYKLVKHARQMGRRLWADLESGNLRTVVSKPENRSSSCPGSVSLSGKDALGVVPLPCGLTLGSHVTIVGKPLAARPDFEPNIAVVKENEPVMVSQFVVELQGLKTVDGEEPPRVFHFNPRLKGDWSGKPVIELNTCYRMQWGSALRCDGWKSKADDDTVDRMVKCEKWIRDDEHHLEESKSTWWLKRLIGRTKKVNVDWPFPFSEGKLFVLTISAGLEGYHVTVDGRHVASFPYRAGFTLEDATGLSLAGDIDVHSIFAASLPSSHPSFSPQRHLEFSTRWRAQPLPDTGVELFVGILSAGNHFSERMAVRKSWMQHRLVKSGAVVARFFVALHARREINVELKKEAEYFGDIVIVPYLDNYDLVVLKTVAICEYGVHTVSAKYIMKGDDDTFVRVDAVIREARKVPDDTSFYIGNINYYHKPLRYGKWAVTYEEWPEEDYPPYANGPGYILSSDIARYIVSEFEMHKLRLFKMEDVSMGMWVEQFNRSKTVQYSHSLNFCQFGCIEDYYTAHYQSPRQMMCLWDKLQRQTRPQCCDIR 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01134 646 SMART Gal_bind_lectin_2 162 366 IPR001079 GO:0030246
Vimu10g01134 646 Gene3D - 392 642 - -
Vimu10g01134 646 FunFam Hydroxyproline O-galactosyltransferase 391 634 - -
Vimu10g01134 646 Gene3D - 158 274 - -
Vimu10g01134 646 ProSiteProfiles Galactoside-binding lectin (galectin) domain profile. 158 367 IPR001079 GO:0030246
Vimu10g01134 646 FunFam Hydroxyproline O-galactosyltransferase GALT4 157 274 - -
Vimu10g01134 646 SUPERFAMILY Concanavalin A-like lectins/glucanases 160 365 IPR013320 -
Vimu10g01134 646 CDD GLECT 159 365 IPR001079 GO:0030246
Vimu10g01134 646 Gene3D - 288 368 - -
Vimu10g01134 646 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 380 595 IPR002659 GO:0006486|GO:0016020|GO:0016758
Vimu10g01134 646 Pfam Galactoside-binding lectin 160 365 IPR001079 GO:0030246
Vimu10g01134 646 Pfam Galactosyltransferase 413 593 IPR002659 GO:0006486|GO:0016020|GO:0016758
Vimu10g01134 646 SMART galectin_3 159 367 IPR001079 GO:0030246
Vimu10g01134 646 FunFam Hydroxyproline O-galactosyltransferase GALT2 281 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01134 Vimu-Chr10 10885457 10888613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01134 11 646 Glycosyltransferase AT1G74800 63.691 0.0 875
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01134 K20843 - gmx:100816777 1134.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01134 10 10885457 10888613 Vimu10g01134 10 10885457 10888613 ECH
Vimu7g03837 7 34761591 34765169 Vimu10g01134 10 10885457 10888613 PCT