Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00980 ATGGCCTTGTTTGCTTTTGCAGCAGTGCTTCTTTTGGCCTTCACCAGCTCTTCAAGTGCCACTTGGTGCGTTTGCAAGGAGGGAAGTGATACCATACTGCAGAAAACCTTAGACTATGCGTGTGGAGCTGGGGCTGATTGTAACCCTTTGCACCAAAATGGCCCTTGTTTTCAACCAAACACTGTTAGAGCTCACTGTAACTATGCAGTTAACAGCTATTTCCAAAGGAAGGGTCAAGCTCAAGGTTCTTGTGACTTTGCAGGAACTGCTACTGTTACTGCATCAGATCCCAGTAAATCCTCCACACTACTGTTTTCTTCCTCTTTCTTCATCAGAGGAATTTCATGA 348 0.4511 MALFAFAAVLLLAFTSSSSATWCVCKEGSDTILQKTLDYACGAGADCNPLHQNGPCFQPNTVRAHCNYAVNSYFQRKGQAQGSCDFAGTATVTASDPSKSSTLLFSSSFFIRGIS 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00980 115 Gene3D - 15 110 - -
Vimu10g00980 115 Pfam X8 domain 21 91 IPR012946 -
Vimu10g00980 115 PANTHER BETA-1,3 GLUCANASE 10 101 IPR044788 -
Vimu10g00980 115 FunFam Glucan endo-1,3-beta-glucosidase 4 16 108 - -
Vimu10g00980 115 SMART X8_cls 21 109 IPR012946 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00980 Vimu-Chr10 8921933 8922577 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00980 17 98 Glycoside Hydrolase AT2G01630 50.000 4.29e-23 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00980 - - vum:124828509 181.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00853 7 8385686 8388217 Vimu10g00980 10 8921933 8922577 ECH
Vimu10g00980 10 8921933 8922577 Vimu10g00980 10 8921933 8922577 ECH