Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00886 ATGTATAGTTCTGCCTGGATGATGCTCTCTCGCCCATTTACTGAATACTGTATATGGGGTTGGGATAACTTACCCAGAATAGTCTTGATGTACTATGCCAACTTTCTGTCTTCCCCGGAAGGGTATTTTCACACAGTCATCTGCAATGCAGAGGAGTTTCGAAACACTACTGTTAATCATGACCTCCACTTCATATCATGGGACAACCCTCCAAAACAACATCCCCATTTTCTTACAGATAATGATTACCAGAGAATGGTGGATAGCAATGCTCCTTTTGCTAGGAAATTTGGCAGGAACGAACCAGTCTTGGATAAGATTGATAAGGAACTCTTGGGAAGAAATGCAGATGGTTACGTGCCCGGTAAATGGTTCACTCAAACGAATTCAAGCACCATTGACCAATATTCTGGGATAGGAAATATCACCGACCTTAGGCCTGGGCCTGGAGCTGAAAGGCTTGGACGCCTTATCAGTGGTTTATTATCAGCGGAAAATTTTCAGGCAAATCAGTGTTCTTGA 522 0.431 MYSSAWMMLSRPFTEYCIWGWDNLPRIVLMYYANFLSSPEGYFHTVICNAEEFRNTTVNHDLHFISWDNPPKQHPHFLTDNDYQRMVDSNAPFARKFGRNEPVLDKIDKELLGRNADGYVPGKWFTQTNSSTIDQYSGIGNITDLRPGPGAERLGRLISGLLSAENFQANQCS 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00886 173 PANTHER GLYCOSYLTRANSFERASE 3 172 IPR044610 GO:0015020
Vimu10g00886 173 Pfam Core-2/I-Branching enzyme 3 86 IPR003406 GO:0016020|GO:0016757
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00886 Vimu-Chr10 7891694 7892643 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00886 4 172 Glycosyltransferase AT5G15050 70.414 9.56e-84 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00886 K20891 - gmx:100820204 336.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00886 10 7891694 7892643 Vimu7g01018 7 9921436 9924325 PCT