Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00796 ATGCGCGTCGAGAGAAATGCTAAAGTAGAAAATTCTGCTAAGAGATTGAATTTTACTGAAGAAATTTTAAGTGCAACATCCTTCTCACGGCAACTATCAGAGCAAATGGTTCTGGCCAAGGCTTATGTGATTATTGCCAAAGAGCACAATAATCTTCACCTTGCCTGGGAGCTTAGCTCAAAAATTAGAAGTTGCCAGCTTTTGCTTTCAAAAGCTGCCATGACTGGGGAGCCTGTGACCATGGAGGAAGCTGGGCCAGTTATTAAAAGCCTGTCTTCTCTAATTTTCAAGGCACAGGATGTCCATTACGACATTGCAACCACTATAGTAACGATGAAATCATATATTCAAGCACTTGAAGAACGTGCAAATAAAGCAACAATTCAAAGCACTGTGTTTGCTCAAGTATCAGCTGAAGCACTACCCAAGAGTCTTCATTGCTTAAATGTGAAACTTATGGCTGATTGGCTAAAGATGACATCCCGGCAAAAATTTTCACATGAGAGTAGAATCTCTCCCCAGCTCACAGATAATAATCTATATCACTTCTGCATTTTTTCAGATAATGTACTGGCAACATCTGTAGTTGTTAACTCTACAGTCATCAATGCAAGCCATCCAAAACGCTTCGTCTTTCACATTGTTACTGATGGTATTATTTATGGAGCAATGAAAGCATGGTTCCTCAGTAATGACTTAAAAGGGGCTACCATAGAGGTGCAGAATATTGAGGAATTTTATTGGTTGAATGAATCTTATGCTCCAATTGTCAGACAGCTACACAGTCCAGAATCACGAGCCTTTTATTTTGGGCCTTTTCAAAGTGTAAATGTTGAGCCAAAATTGCAGAATCCCAAGTTTGTGTCTTTGCTAAATCATCTTCGGTTTTACATCCCTGAGATTTATCCATTACTTGAGAAGATTGTTTTCCTTGATGATGATGTTGTTGTTCAGAAGGACCTAAGCCCACTTTTCTCATTGGATTTGCATGGAAATGTGAATGGTGCCGTTGAAACTTGTCTAGAAGCATTTCACAGGTACTACAAGTATCTCAACTTTTCAAATTCGATTATAAGCTCAAAGTTTGATCCACAGGCATGTGGATGGGCCTTTGGTCTGAATATTTTTGACCTGGGTGCATGGAGGAAGGCAAATGTCACCGCAAAGTATCATTATTGGCAAGAGCAGAATGCTGATGGGACACTCTGGAAGCTTGGTACACTTCCCCCTGCTCTTCTAAGCTTTTATGGCTTGACAGAACCACTTGACAGAAGATGGCATGTATTAGGATTGGGTTATGACCTAAATATTGACAGCCGCCTGATTGAAAGTGCAGCAGTTATTCACTTCAATGGGAACATGAAACCATGGCTGAAGTTAGCTATAGGCAGGTATAAGCCATTATGGCAGAGGTACATAAATCAAAGTCACCCTCATCTACAAGATTGTGCCACCGGTTAA 1461 0.4038 MRVERNAKVENSAKRLNFTEEILSATSFSRQLSEQMVLAKAYVIIAKEHNNLHLAWELSSKIRSCQLLLSKAAMTGEPVTMEEAGPVIKSLSSLIFKAQDVHYDIATTIVTMKSYIQALEERANKATIQSTVFAQVSAEALPKSLHCLNVKLMADWLKMTSRQKFSHESRISPQLTDNNLYHFCIFSDNVLATSVVVNSTVINASHPKRFVFHIVTDGIIYGAMKAWFLSNDLKGATIEVQNIEEFYWLNESYAPIVRQLHSPESRAFYFGPFQSVNVEPKLQNPKFVSLLNHLRFYIPEIYPLLEKIVFLDDDVVVQKDLSPLFSLDLHGNVNGAVETCLEAFHRYYKYLNFSNSIISSKFDPQACGWAFGLNIFDLGAWRKANVTAKYHYWQEQNADGTLWKLGTLPPALLSFYGLTEPLDRRWHVLGLGYDLNIDSRLIESAAVIHFNGNMKPWLKLAIGRYKPLWQRYINQSHPHLQDCATG 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00796 486 SUPERFAMILY Nucleotide-diphospho-sugar transferases 181 483 IPR029044 -
Vimu10g00796 486 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 182 483 IPR029044 -
Vimu10g00796 486 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 9 484 IPR029993 GO:0047262
Vimu10g00796 486 Pfam Glycosyl transferase family 8 185 460 IPR002495 GO:0016757
Vimu10g00796 486 CDD GT8_like_1 181 474 - -
Vimu10g00796 486 FunFam Hexosyltransferase 183 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00796 Vimu-Chr10 7010276 7013353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00796 4 483 Glycosyltransferase AT2G20810 55.579 0.0 570
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00796 K13648 - gmx:100817381 903.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00796 10 7010276 7013353 Vimu10g00796 10 7010276 7013353 ECH
Vimu7g00885 7 8663585 8666873 Vimu10g00796 10 7010276 7013353 PCT