Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00541 ATGGAAGAAGTTAACGTGGTTCAAACCAAAGGTGGAACAGTTTCAGTAGCTTCTGCATTTGCTGGGCATCAGGAAGCTATTCAGAGCAGAGATTACAAATTTTTAAGAATTGCTGTTGAAGAAGCATATAAAGGGGTAGAGTGTGAAGATGGTGGTCCATTTGGTGCAATTATAGTTTGCAACGATGAAGTAGTTGCCAGTTGCCACAACATGGTGCTCAGGAACACAGATCCTACTGCTCATGCAGAAGTCACTGCTATAAGAAAGGCTTGTGAAAAGCTAAAGCAGATAGAACTTTCAGACTGTGAAATATACGCTTCGTGTGAACCTTGTCCAATGTGCTTTGGAGCAATTCATCTTTCACGAGTTAAGAGACTGGTTTATGGAGCAAAGGCAGAAGCAGCAATTGCGATTGGATTTGATGACTTTATTTCAGATGCATTGAGAGGAACTGGATTCTATCAGAAAGCACAGCTTGAAATTAAAAGGGCTGATGGCAAAGAGGCTAACATTGCTGAAGAAGTTTTTCAGAAAACAAAGGAAAAATTCAGAATGTATTAG 561 0.4011 MEEVNVVQTKGGTVSVASAFAGHQEAIQSRDYKFLRIAVEEAYKGVECEDGGPFGAIIVCNDEVVASCHNMVLRNTDPTAHAEVTAIRKACEKLKQIELSDCEIYASCEPCPMCFGAIHLSRVKRLVYGAKAEAAIAIGFDDFISDALRGTGFYQKAQLEIKRADGKEANIAEEVFQKTKEKFRMY 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00541 186 Gene3D Cytidine Deaminase, domain 2 30 186 - -
Vimu10g00541 186 ProSitePatterns Cytidine and deoxycytidylate deaminases zinc-binding region signature. 81 118 IPR016192 GO:0008270|GO:0016787
Vimu10g00541 186 ProSiteProfiles Cytidine and deoxycytidylate deaminases domain profile. 29 143 IPR002125 -
Vimu10g00541 186 PANTHER CYTOSINE DEAMINASE FAMILY MEMBER 23 133 - -
Vimu10g00541 186 CDD nucleoside_deaminase 35 142 - -
Vimu10g00541 186 FunFam tRNA-specific adenosine deaminase 29 185 - -
Vimu10g00541 186 SUPERFAMILY Cytidine deaminase-like 24 145 IPR016193 GO:0003824
Vimu10g00541 186 Pfam Cytidine and deoxycytidylate deaminase zinc-binding region 30 129 IPR002125 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00541 Vimu-Chr10 4413751 4414692 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00541 - - gmx:100527067 358.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01594 7 14967577 14970235 Vimu10g00541 10 4413751 4414692 PCT