Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00462 ATGGTTCAAACCAAAACCACTCCAAACCCCTCTAAACCCGACGCCATCCACCCACTCACGCCGGCAAAAACCCACGAACCTTCATCCGTTTCTACCTCTCCCCCTTTCCCCCGCCGCAGCCTCCGCCTCGCCTCTCTCTCCGACGCCTCCCCCGCCGCTAGGGTTTCCGCCGCCTCCAACCGCCAGGCCTTTCTCAACTTAAGATCGGGAAAGAGGGTTCTCAAGAGAGCCATGACAAACCACTCAGAGGAACAAGGTAATGACGCAAACGATGCAACTGATCACGTTGCAGTGCCGGTTCATGTCAACGTCACCGCGCCAGAAACTACAACAACGGAAAACTCAGCCGTCAATGTCAATGTTGTAGCAGATGATTCCGGTGTTAGGGTTTCCACCCGGAGCCGGAAGCGCAATAGTGACTCAACCGGTTTCGAACACGAGGAGTTTCTCTACTTAAGGTCGGGAAAGAAGACTTTAAAGAGAACACTCAATTTCTATTCCAGAGAACAAGTTATTAACGCAGATGATGATGATGCTGATAATGATGACGACGATGATGGTGATGTGGCAGTGGCGGTTGATGGTGACGTGACAACACCGGAATCCAGAACGGAGAACTCCGGTGTGAATAATGCACCTGCGCGAGTTCGAGAACGTTCTAGAAACTCCAATGCAAAGGAGCGCCGTTCCGGTTTGAGGAGGAACGATCATATGGAACGCTTCCACGACATTGCGCGGGAAAACGCGTCGCGGTTTGCTTTCTTCGCACCGGAAGAGGAAGATGGTGACCGGTTGCCGCCGGTTCCCGAAGCGGCGAGTGAGGAAATTGAGGACTGGCCCGGTCCTTTCTCCACGGCTATGAAAATCATCAGAGACCGAGGGATGAATCTTCAGAACGCTCAAACAAGTTCGCAGACGAACTTGTGTGAATCTATTAAGTGGGTTCCCAATGCGAAGAAAGGGGATTTGGGCATTTTATCGGTTCCTTCGTTGCAAGATATGTGCTTTAAGATTCTTGTGAAGAATGTTGACGCGATTGCATCGCTCGAGAGTGTGCCTGATGCGCTGAGGCACCGGCTTAGCCAGTTGCTCTGTGACTCGAGGAGAATTAACGGTCACTTTCTGGAGCTTCTTGTGCGTGGAACTCCCACGGAGATTCGGTTAAGGGACTGCTCGTGGTTGACTGAGGAACAATTTACCGAGTGTTTTCGAATGTGTAACACGGAGAATTTGTTGGTACTGCAACTTGACCAGTGTGGGCGATGTTTGCCTGATTTTGTAGTAGTTGCGACTTTGGCACGGTCACCTAGGAACTTGGTTAGATTAACTACTCTATCACTCCGTGGTGCATGCCGACTTTCAGATGGAGGTTTACGTGCGCTCGTTTCTTCAGCTCCTGCTCTTAGATCGATAAATCTCAGCCAGTGCTCCCTTCTCACATCTGCTAGTATATATATTTTGGCCGAATCATTAAGACATCTTCTGAAAGAGTTGTTCCTTGATGATTGTCAATGCATTGATGCTACACTAATTGTGCCAGCACTGATTGAGCTTGAACATTTAGAAGTGTTGTCAGTGGCTGGTATTCAAACTGTGTGTGATGAATTTGTCAAGAATTACATTGTTGCACGTGGCCAAAACATGAAAGAGCTTGTGCTTGATCTTATGAACCTGAACAGGTTAACAGATTTATCCGTTGGATATCTTACCAATAGTTGCCGCGTACTTCATACCCTGAAGCTTTGCCGAAATCCATTCAGTGATGAAGCAATTGCTGCATTTGTGGAAACCACCGGAGGGACCCTGAAGGAACTGTCACTTAATAACATCAAGAAGGTTGGTTACCACACAACCTTATCACTTGCAAACCATGCGAAAAATTTGCACTCTCTAGATTTATCTTGGTGCAGAAATTTGACAGACAATGCACTAGGTTTGATTGTGGATAGCTGCTTGGCCCTGAGGTTACTCAAACTTTTTGGATGCACTCAGGTAACAGATGCATTTCTTAATAGTCACTCAAACCTACAGATGCAGATAATTGGTTTAAAAATGTCTCCGGTTTTAGAACATGTCAAAGTTCCAGATCCTCATCAGGGTGCTTTGAATTATTCATCAGTCTCTTGGGATTTGTGCCCGGAGTTCGTGGAGCATTACCGTTTCTCAGGATTGTTTCCATCATCTGGAAGATTTTTATAA 2199 0.4729 MVQTKTTPNPSKPDAIHPLTPAKTHEPSSVSTSPPFPRRSLRLASLSDASPAARVSAASNRQAFLNLRSGKRVLKRAMTNHSEEQGNDANDATDHVAVPVHVNVTAPETTTTENSAVNVNVVADDSGVRVSTRSRKRNSDSTGFEHEEFLYLRSGKKTLKRTLNFYSREQVINADDDDADNDDDDDGDVAVAVDGDVTTPESRTENSGVNNAPARVRERSRNSNAKERRSGLRRNDHMERFHDIARENASRFAFFAPEEEDGDRLPPVPEAASEEIEDWPGPFSTAMKIIRDRGMNLQNAQTSSQTNLCESIKWVPNAKKGDLGILSVPSLQDMCFKILVKNVDAIASLESVPDALRHRLSQLLCDSRRINGHFLELLVRGTPTEIRLRDCSWLTEEQFTECFRMCNTENLLVLQLDQCGRCLPDFVVVATLARSPRNLVRLTTLSLRGACRLSDGGLRALVSSAPALRSINLSQCSLLTSASIYILAESLRHLLKELFLDDCQCIDATLIVPALIELEHLEVLSVAGIQTVCDEFVKNYIVARGQNMKELVLDLMNLNRLTDLSVGYLTNSCRVLHTLKLCRNPFSDEAIAAFVETTGGTLKELSLNNIKKVGYHTTLSLANHAKNLHSLDLSWCRNLTDNALGLIVDSCLALRLLKLFGCTQVTDAFLNSHSNLQMQIIGLKMSPVLEHVKVPDPHQGALNYSSVSWDLCPEFVEHYRFSGLFPSSGRFL 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00462 732 SUPERFAMILY RNI-like 360 669 - -
Vimu10g00462 732 MobiDBLite consensus disorder prediction 174 237 - -
Vimu10g00462 732 FunFam DNA repair protein rhp7 isoform A 601 700 - -
Vimu10g00462 732 FunFam RNI-like superfamily protein 324 539 - -
Vimu10g00462 732 MobiDBLite consensus disorder prediction 1 39 - -
Vimu10g00462 732 Gene3D Ribonuclease Inhibitor 615 695 IPR032675 -
Vimu10g00462 732 MobiDBLite consensus disorder prediction 219 237 - -
Vimu10g00462 732 SMART LRR_CC_2 439 464 IPR006553 -
Vimu10g00462 732 SMART LRR_CC_2 651 676 IPR006553 -
Vimu10g00462 732 SMART LRR_CC_2 465 490 IPR006553 -
Vimu10g00462 732 SMART LRR_CC_2 625 650 IPR006553 -
Vimu10g00462 732 SMART LRR_CC_2 573 597 IPR006553 -
Vimu10g00462 732 PANTHER UNCHARACTERIZED 357 683 - -
Vimu10g00462 732 Gene3D Ribonuclease Inhibitor 295 614 IPR032675 -
Vimu10g00462 732 MobiDBLite consensus disorder prediction 199 218 - -
Vimu10g00462 732 MobiDBLite consensus disorder prediction 175 191 - -
Vimu10g00462 732 MobiDBLite consensus disorder prediction 24 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00462 Vimu-Chr10 3499985 3504953 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00462 K15082 - gmx:100808150 910.598
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00462 10 3499985 3504953 Vimu10g00462 10 3499985 3504953 ECH
Vimu7g01499 7 14193964 14198883 Vimu10g00462 10 3499985 3504953 PCT