Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00458 ATGCAAATGGCTGGAATTTCAAAGGAGGAAGTGACCGGTAGTCCTAAATGGGGTGCTTCAATTATTATGCAGACAACAGAGGATGTGGCTAGAGCTGTTGCTTCTGCTGTGAATTCCCCAAGGCCATCTGTTATATATTCATCAAAAAATGATCAAGGTGGAAATCAACTTCAAAGGCTGCAGTATCAAGTTACAAAAATGATAAAAGGATTTTCTCGCCCTTCTGAAGTTAAATATAATAATTACAATCCGGAAATACTGACAACTCAGAAGCGTCAATGGGCTGCAAACTTTCAGTTACAGTACTTGGTAGAACTAAAATCTTCTTATGGAATCATTAGAATTTGGCCCAAGCATGAATTACTTGAACGTTTAGATGTCCCCCCTTTCACCTTAAACCATCATATCTGCATATGCTTCTTCTTCTTCTTGCTAAATGACCATAGGTCATGGAAGGAGCCAACAAAGCTGTTTGAAAGCATGGTGGTTGTTGGACTTCATCCTAATTGTGATATTCAGGCACTGCAAGCGCAACATTTCTTAAGAAAGTCTGAAGGCCCCGGTAAATTAAGAAGTGCTCTTGGTTATCAAAATCAATCCCGTGTGGGGCCTATTCTTGAACCTCAGGTCTTATTTGTTTACCCTCCAGAAAAACAGCTGCCTCTTAACGACAAGGATCTTCTCTCTTTCTGCTTCCCAGGAGGCTTGGAGGTTAATGCTGTTGAGAGAACACCTTCCATGAGTGAATTGAATGAAATTCTTTTTGGGCAGGAGCACCTTAAACAAAGGGATCTGTCTTTTGTATTTAGACTACAGGGTGCTGATAATTCAACTCTTTATGGATGCTGTGTCTTGGTTGAAGAGTTAGTGCAAAAACCCTCTGGATTGCTCTCCCTGGTTTCTGATAAACGGTCAAGCTATTCTCCTTTGAAACGCGAACGGCATATATTAACTACACAAAGATGTTACTGCATTCTCTCAAGGCTCCCATTTTTTGAATTGCACTTTGGTGTTTTGAACAGCATCTTCATGCAAGAACGCCTAGATCGCTTGACGAAAAGCATTGGAGATTTAGATTTAGAATATGTTGAAGATAGCTGTGGGCAAGACAATTTTGGGGAAGATTCAGAATGTATGTTGGTGAATGATAGATTAGAAGATAGACATGATGACAGTCAAACGGTTTCTCAATCAAGCCTAAGAAATTCCTCACTGGAAATCATTGAGGGTGATAGTAATTATCCCAAGAAAGAAATAGTTAATACGGAGCTGCATATATTTAATGATAGAGTCAATGATGGCAATGATGTGCCTTGTGATATTGCGAAGGATAAAAAAACTGTTAATGAGGAATCGGCCCCTACGAATAATGAGGATTGTGATTTGTACGGAGATGCTTTTGTAACAAATAAACAGTCAGAAGATAGGCGTTTACCCAATGCTATTCTACCACTCTTGCGGTATTGCCAGTATGAAAGCTCTGAATCTTCCTGCAGATGTGCTTTGTCATTGCTCAGTCCATTTAGTCTATATTTATGTAAAGTCAGCACATGTAATGGTGTTCACTGTGCTTTGACTGATGTCATAGATGTGCTTTGTTTTGTGGTCATATCTGAAAGTGCTAATATCAATATCTTCTGTATGATTTGTTTGATGTACTTGATTCTCTATAGTTTTCAGGGTTCTCCTTGTGATGACAGGAATTTCAGGAGTGACGCCGATGATACCGAGACAGAAGAAGCTTCATTCTCTGGTCAAGAGGATTTAAATGACCTAAATGGTATTCTTGAGTGGGCTAAGGCAAACAACTGTGGATTATTACAGATTATAAGTGAGTATTATTGCTTGAGTTGCCCTGCAAGGGGCACATCAATTAGATTTCATCCTTTGGATCACCTGCATCCCTTAGAATATCACAGACCAGATGAGGCAATTCTACATCTTGCTGGTTCAATTGTTGATTTGAAATCTTTCAGTGCAGGTCTGGAATTTGCAGAGGCTCATAATTCTCTTCTGGCTGAGGAGGAGGCAACTGCATTATCTACATGGGCTGTTGGGTGCATGTGTGGTACCTTGAGACTTGAAAATGTGTTAGCATTTTTTGCAGGAGCTCTACTGGAGAAGCAGATAGTCTTTGTCTGTTCTAATTTGGTATGTCTTGTGGCTCAACTTAAGTCAGTAATGGGAATCCTATCTGCGTCAGTTTTATCAGTTATTTCACTAATCCGTCCCTACCAATGGCAAAGCTTGCTAATGCCGGTTCTACCAAATGACATGCTTGAGTTTCTGGATGCACCTGTGCCTTACATAGTTGGTATCAAAAACAAGACCAGTGAAGTTCAGTCAAAGTTAACTAATAACGTTATCCTGGTTGACGTCAACAGGAATCAGGTGAGGTCATCAACAATACCTCAACTGCCAAGGCAGAGAGAGTTGATCGCTTCTTTACGCCCTTATCATGCAACTCTAGTGGGAGAAAGTTACTTGGGTAGGAGAAGGCCAGTATATGAATGCACAGAAGTGCAGGTAGAAGCTGCCAAGGGGTTCTTATCGGTGTTAAGGACTTATTTGGATTCCCTTTGCCATAACATTCGTTCTCATACAATAACCAATGTACAATCCAATGATGATAAGGTATCCTTGCTTTTGAAGGAGAGTTTCATTGACTCGTTTCCTTATCGTGATAGGCCTTTCATGAAGGTTTGGCTCATGAACTTTATTTATGCTAATTATATAAAAAGCCAAGCCAGGGTGTTGAAGGGTTTTACTGAAGTCTTGAGATTCATGTGGAACCTTTACCATGTGGCTGTTGAGTATCTTCTTTTCGTGGATACGCAGCTCTTCTCTGTGCATACAGATCTTGTTCTCTCTTTCTTCCAAAAGGAATAG 2889 0.4019 MQMAGISKEEVTGSPKWGASIIMQTTEDVARAVASAVNSPRPSVIYSSKNDQGGNQLQRLQYQVTKMIKGFSRPSEVKYNNYNPEILTTQKRQWAANFQLQYLVELKSSYGIIRIWPKHELLERLDVPPFTLNHHICICFFFFLLNDHRSWKEPTKLFESMVVVGLHPNCDIQALQAQHFLRKSEGPGKLRSALGYQNQSRVGPILEPQVLFVYPPEKQLPLNDKDLLSFCFPGGLEVNAVERTPSMSELNEILFGQEHLKQRDLSFVFRLQGADNSTLYGCCVLVEELVQKPSGLLSLVSDKRSSYSPLKRERHILTTQRCYCILSRLPFFELHFGVLNSIFMQERLDRLTKSIGDLDLEYVEDSCGQDNFGEDSECMLVNDRLEDRHDDSQTVSQSSLRNSSLEIIEGDSNYPKKEIVNTELHIFNDRVNDGNDVPCDIAKDKKTVNEESAPTNNEDCDLYGDAFVTNKQSEDRRLPNAILPLLRYCQYESSESSCRCALSLLSPFSLYLCKVSTCNGVHCALTDVIDVLCFVVISESANINIFCMICLMYLILYSFQGSPCDDRNFRSDADDTETEEASFSGQEDLNDLNGILEWAKANNCGLLQIISEYYCLSCPARGTSIRFHPLDHLHPLEYHRPDEAILHLAGSIVDLKSFSAGLEFAEAHNSLLAEEEATALSTWAVGCMCGTLRLENVLAFFAGALLEKQIVFVCSNLVCLVAQLKSVMGILSASVLSVISLIRPYQWQSLLMPVLPNDMLEFLDAPVPYIVGIKNKTSEVQSKLTNNVILVDVNRNQVRSSTIPQLPRQRELIASLRPYHATLVGESYLGRRRPVYECTEVQVEAAKGFLSVLRTYLDSLCHNIRSHTITNVQSNDDKVSLLLKESFIDSFPYRDRPFMKVWLMNFIYANYIKSQARVLKGFTEVLRFMWNLYHVAVEYLLFVDTQLFSVHTDLVLSFFQKE 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00458 962 SMART uDENN_cls 154 287 IPR005113 -
Vimu10g00458 962 Pfam uDENN domain 208 285 IPR005113 -
Vimu10g00458 962 Pfam DENN (AEX-3) domain 670 795 IPR001194 -
Vimu10g00458 962 SMART DENN_cls 318 796 IPR001194 -
Vimu10g00458 962 Gene3D - 680 858 IPR043153 -
Vimu10g00458 962 Gene3D - 147 355 - -
Vimu10g00458 962 ProSiteProfiles Tripartite DENN domain profile. 191 924 IPR037516 -
Vimu10g00458 962 PANTHER DENN DOMAIN-CONTAINING PROTEIN 2 47 958 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00458 Vimu-Chr10 3447094 3455701 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00458 - - gmx:100814801 1310.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00458 10 3447094 3455701 Vimu10g00458 10 3447094 3455701 ECH
Vimu7g01487 7 14073045 14087410 Vimu10g00458 10 3447094 3455701 PCT