Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00454 ATGATGCTGAGTCTGCAAACTCGTTTACCGTCGTTTTCCCTCGTTTTCTCTCCGTTTAAACCCTATTCTCCACCCTTTAAATCCAAACCCCGTTTTTCAACGATCAGAATGTCCTCAAGCCAAAGTGTCGTGGAGCACATTGTCCTCGTCAAGGTCAAAGATGGAACAGAGCCTAGCAAGGTCAGCGCCATGGTCAACGCCATGAACTCGTTAGCCTCCATCGACGGAGTCCTGAACCTCACGGCGGGCCCACTTCTCCGTAACGGACCCACCACCGCTTTCACCCACATGCTCCACAGCCGCTACCACTCCAAGGACCACCTCCAAGCCTACAACGTGCACCCGACCCACATCGCCGCCGTCACCGGCTTCATTTTTCCAGTCTCCGAGGACATCATGGTCGTCGACTGGGTCGGCGCAAAAACGACCCTTAACCCGTCGGCGACGGGATCGGGCCTCCGCGTGAGGTTTTTGAAGCTGAAGGGGGGCGGTGGCGACGACCATGACGAAATTAAGGTTAAAGATGAGGTTTTGAGTGTGGTAGGAGGAATGAAGGAGGGTGTTGGAGAATTGTCTTACGGCGAGAATTTCTCGCCGGAGAGAGCGAAGGGGTTCTCGATCGCTTCGCTGTCTATTTTCCCAGGACGGAAGGAACTGGAGAGTGTGAAGTTGGAGAAGGTTGTGGAACATGTGGAGGACACCATTGTTGTTGACTATGTGGTGCCTTAG 729 0.5391 MMLSLQTRLPSFSLVFSPFKPYSPPFKSKPRFSTIRMSSSQSVVEHIVLVKVKDGTEPSKVSAMVNAMNSLASIDGVLNLTAGPLLRNGPTTAFTHMLHSRYHSKDHLQAYNVHPTHIAAVTGFIFPVSEDIMVVDWVGAKTTLNPSATGSGLRVRFLKLKGGGGDDHDEIKVKDEVLSVVGGMKEGVGELSYGENFSPERAKGFSIASLSIFPGRKELESVKLEKVVEHVEDTIVVDYVVP 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00454 242 PANTHER - 41 240 IPR044662 -
Vimu10g00454 242 Pfam Stress responsive A/B Barrel Domain 44 137 IPR013097 -
Vimu10g00454 242 Gene3D - 35 141 - -
Vimu10g00454 242 SMART Dabb_2 153 241 IPR013097 -
Vimu10g00454 242 SMART Dabb_2 44 139 IPR013097 -
Vimu10g00454 242 SUPERFAMILY Dimeric alpha+beta barrel 43 138 IPR011008 -
Vimu10g00454 242 ProSiteProfiles Stress-response A/B barrel domain profile. 44 137 IPR013097 -
Vimu10g00454 242 ProSiteProfiles Stress-response A/B barrel domain profile. 152 242 IPR013097 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00454 Vimu-Chr10 3397329 3398057 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00454 - - var:108330950 413.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00454 10 3397329 3398057 Vimu10g00454 10 3397329 3398057 ECH
Vimu7g01482 7 14037817 14038584 Vimu10g00454 10 3397329 3398057 PCT