Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00446 ATGCTGGACAAATCAATTAGAGAAATTGAGCGCGAGCGGCAAGGTTTGCAAACACAAGAGAAGAAATTGATTTTGGAGATAAAGAAAAGTGCTAAACAAGGCCAGATGGAGCAACAAGATGCACTCATGCATGCCACAGCTCTCTTAAACCCCAATTGGCACTCAGCTGTGCAAGAACTTTCAGCTCCTTTTGCCAATAGTACTTGGACTTCAATACCCTTAGACGAAGAAGCTGCATGGTCCAGCCTTCAGGATTTGAAGCAGTTAAAAGCTCTCTTGCTTCCAAAGCCTTATTTGGCCTTAAACAGGCCTGACTTGAGAGCAGACCTTGGTTGCTCACTCATGTTGAGGCCAAACGTCATTGCTTTTCAAACACTACAGCTAAGGTGGGTTGTTCAGGGAGCTGTTAGAGTCATGGCAAAAGATCTGGTTAGAACACGGCATCAGATTGAGAAGTTTTATAAGCTAAAATCTCAGCTCCAAGGTGTATCCCTCCGAATTCAGACTTTGAAATCAACACAAGCAATGGGTGAGGCTATGAAAGGCGTGACAAAGGCCATGGGGCAAATGAATAGGCAGATGAACTTGCCATCTTTGCAGAAAATCATGCAAGAATTTGAGAGACAGAATGAGAAGATGGAATTGACATCTGAGATGATGGGAGATGCAATAGATGATGCTTTGGAAGGAGAAGAAGACGAAGAAGAAACTGAGGATCTAGTGAACCAAGTTCTTGATGAGATTGGAATTGACATCAACCAAGAGCTTGTAAATGCACCATCATCAGCTGTTGCTGCTCCAGCTGCAAAGACCAAGGTAGCTCAAGTTGAAACTTCTGGGAATGATGATGGAGGGATAGATAGTGACCTACAGGCAAGGTTAGACAATTTGAGAAAAATGTAG 903 0.433 MLDKSIREIERERQGLQTQEKKLILEIKKSAKQGQMEQQDALMHATALLNPNWHSAVQELSAPFANSTWTSIPLDEEAAWSSLQDLKQLKALLLPKPYLALNRPDLRADLGCSLMLRPNVIAFQTLQLRWVVQGAVRVMAKDLVRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMELTSEMMGDAIDDALEGEEDEEETEDLVNQVLDEIGIDINQELVNAPSSAVAAPAAKTKVAQVETSGNDDGGIDSDLQARLDNLRKM 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00446 300 Coils Coil 2 26 - -
Vimu10g00446 300 Coils Coil 287 300 - -
Vimu10g00446 300 PANTHER CHARGED MULTIVESICULAR BODY PROTEIN 2 298 IPR005024 GO:0007034
Vimu10g00446 300 Coils Coil 196 216 - -
Vimu10g00446 300 Pfam Snf7 134 263 IPR005024 GO:0007034
Vimu10g00446 300 Gene3D - 1 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00446 Vimu-Chr10 3328490 3332048 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00446 K12191 - gmx:100526885 272.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00446 10 3328490 3332048 Vimu10g00446 10 3328490 3332048 ECH
Vimu7g01477 7 13995702 13997038 Vimu10g00446 10 3328490 3332048 PCT