Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00438 ATGTTGTCGAGAGCGGAGGCTGGGAAGAAGAGTGGTGGGGGTTCTAATGCCCCGAAGAAGTTGTTAAAGGATTTTGAAACCATGAACAAAGCTTTGTACTTGGATAAAGGGTCTGCAAGGAGTTCAATACCTGGTGCAAATTCACGATCTAAATTCACTGGGAAATCTCAGTTACCTGATCCCAAATCTAAGTCTAAAACCAGTGTTAATAATAACAATGATGATGGTGTTCAAAAGGATAAGAAGTCTATTTGGAATTGGAGGCCTCTAAGAGCCCTTTCCCACATCCGAAACAAGAGGTTTAATTGTAGTTTTTATCTGCAAGTTCACTTGATTGAAGGGTTGCCTCCAAGTTTTGATAATGCCAGTCTTGCTGTTTACTGGAAAAGGCGTGATGGGGTTCTTGTGACTGGTCCTGCCAAGGTAATTCAGTCTGTGGCTGAATTTGAAGAGAAGTTGACCTACACTTGCTCAGTGTATGGCAGTAGGAGTGGACCTCACCATTCTGCCAAGTATGAAGCAAAGCATTTTTTGCTCTATGCTTCGCTTCTGAGTGCCCAGGAGATGGATTTGGGAAAGCACCGGGTGGATCTGACAAGGTTGCTTCCTCTCACTCTGGAGGAGCTCGAGGAGGAGAAGAGCTCGGGGAAGTGGACTACTAGTTTTCGATTATCGGGAGTGGCTAAGGGTGCTGTGATGAATGTCAGTTTTGGCTACACGGTTGTTGGTGATAATGCTGGTACTGCCAGAGACAGCCATAATGCTTCTAACGTATTGAGTTCCAGGCAGAATAGTTTTGCTCTGATGAAACAGGATGTTAAACCCCGACAGTTTGATGGAAGCAGCAGGACGAGGCGAACCACGAGTTTGCAGTTATCACCTCGAGCTTCAGATGAGGTAAAGGATCTTCATGAGGTGTTGCCATTGACTAGGTCTGCACTAGCCAGCTCAATAGACATCTTATATAAGAAATTTGATGAAGAAAAGGCTAGTTCTATGCTTAGTGAAGCAGAACTTGATTCGTTCTCCGAAAATCTTGGGTCAATCAAGCCAGATGCATATGCTTCTGATTTTGGAAAAGAAACATTTGACGAGCATGTGAGTAAGGCTGAAGAAAAATGTCCAATGCATGAGGAACCTGAATTTTCAGTGTTTCAAGAAAAGCTGGAGATATTTAAACCAGATGACAATCCTTTACCTGATTCCGCAAATGAAAACCCCGAACAGTTTCAAGGTAATGATTTTTTTGTTGTTGACAAGGGAATAGAACTGTCATCAAATGAACCTGTTATAAGAGAGGAATTCATTGGGAAAGCTCCTGAGGATGCTTCTACAGTTGATACTGCCTATACCCTTGGCATATCAGGTACACAAGAATCTTTTGAAGAGAGTGTTAAACATGATTTTCTGGATGAGGTAAATGATATTTCTAAGGACCAGGTAGTCGTAGAGGAATTTGCTAGCAAAGAGGATGGCTTTGACAGTGATACTAATGAGCTGCTCCTGCAAGAACTAGAATCTGCTTTAAATAGTGTATCAAATTTGGAGAGAGTGGCACTAGAATCTCCAAAAACAGCAGAATTTAAATCTGAACATAAGATGACAAAGTCTCATAGCTTGGATGATGTTACAGAATCAGTTGCCAGTGAGTTTTTAAGCATGTTAGACTTAGAACGTAGTCCAATGGCCTTGAATTCTGAAAGTGAGCCCGAATCTCCAAGAGAGCTACTTTTAAGACAATTTGAGAAGGAGGCTTTGGATGGGGACTTTTCCTCTTTATTTGATTTTGAAATGAACCATGATAATGAAGCAGATGGTGGCTATGATGGTTCCGCTGCATCTGAGCAGTGGAACTTTTCTGAAGATGTCAGGTCATCATCCCTTTTGCAAGACCTGCAGGAGGAGCATCTAGCCGAGTCTCAGGATGTGAGAAGCAAACAGAGGGCTCAGATACTAGAAGACTTGGAAACAGAAGCCTTGATGCGTCAATGGGGTTTGAATGAGGAGGCTTTTCATCATTCTCCACCAAAAGATTTTACTGGTTTTGGAAGTCCAATTCCTTTGCCACCTGAAGAGCCTCCTATATTGCCTCCTCTTGATGATGGGTTGGGCCCTTTTCTTCAGACAAAAGACGGGGGTTTCCTACGCTCTATGAATCCCTCACTTTTCAAGAATTCTAAAAGTGGTGGGAGTTTAATCATGCAGGTATCCAACCCTGTCGTTGTACCAGCAGAAATGGGTTCTGGGATAATGGAGGTTTTGCAGTGTTTGGCTTCAGTGGGAATTGAAAAGCTCTCAATGCAGGCTAAGGAGTTGATGCCTCTAGAAGATATCACAGGGAAGACAATGCAACAAGTAGCATGGGAAGCCATGCCTGTCTTAGAAGGAGCAGAGAGGCAAAGCCATTTGCAGCATAATCCAATAACAAGGCAGGACGGTCCTCATGTGCAAAGGGACTTGAAAGGAATGCCGTCTGTACAAAAGTCTGGCAAGTTTAGTTCAAGAACAGTGGCCAACCAACCAGGATCAGAGTTTGTTTCGGTTGAAGACCTTGCTCCATTGGCTATGGATAAAATTGAAGCACTTTCAATGGAGGGTTTGAGAATACAATCTGGAATGTCAGAAGATGAGGCACCATCAAACATCATTGCACAGTCCATTGGGGATATTTCGGCTCTGCAGGGCAAGGGTGTTGATATTAGTGGGTCCCTTGGTCTGGATGGAGCTGCTGGTTTGCAGTTGATGGATGTAAAAGATGGCAGTGACCTTGGTGATGGTGTGGATGGGATAATGGGCCTATCATTAACTCTTGATGAATGGATGAGGCTGGATTCCGGTGAGATTGATGATATAGATAATATCAGTGAGCATACTTCCAAACTTCTTGCAGCCCATCATGCCAACTCTTTTGACTTCATTCGTGGGAGTTCCAAGGGAGAGAAGAGACGAGGCAAAAGCAGAAGATGTGGTTTGCTAGGAAACAATTTCACAGTAGCATTAATGGTGCAACTCCGTGACCCTCTGAGAAATTACGAACCGGTTGGAACACCAATGCTCGCTCTTATACAAGTTGAGAGAGAGTTCATGCTTCCAAAGCAAAAGATTTTCAACAGTGTGTCTTTGATGATGAAAAACAATGACGAGGATGATGATGATAGGGAAATCCTTGCGAAGGTGGACATGAAGGACACCAAGAGCGAGGAGAATACTTCCGAAGAGGAAGAGGGCATTCCTCAGTTCAGAATCACAGAAGTCCATGTAGCAGGTCTGAAGCCTGAGCCTCAGAAAACGAAGCTCTGGGGCACTTCAAACCAGCAACAATCTGGTTCTCGCTGGTTGCTTGCAAATGGAATGGGGAAGAACAATAATAACAAACTTCCATTGATGAAGTCAAAGGGTTCATCTAAATCTAATGCTCCAGTTACCTCAAAGGTGCAACCTGGTGACTCCTTGTGGAGCATATCATCTCGTCTTTTTGGCAATCGAGGGAAATCACATGAACCTGTGCTAAGGGCATTGTTTGGTTTTGTTATAGTAGCATCAACGAAATTGGACTCATCCTTTAATAATTGCAAAGGACCTGTGAGAGAAACTGAAAGCATGGAAGGAGATTCAAAATTTTCAACGATAGCACCATCATTCTTTGATGGTGAAAATTATCAAATTTGGACAGTACGAATGGAAGCCTACCTAGAAGCTCTAGATCTATGGGAGACAGTTGAAGAGGATATCAAGAATCACAAGGACAGAAAAATCAGAAATGCTAAGGCAAAGGCGTGCCTTTTTGCTGCAGTTTCACCAACCATTTTCACTCGAATCATGTCTCTAAAGTCAGCCAAAGCCATATGGGATTATCTCAAAGAAGAATATGATGGAGATGATCAAATTAAAGGCATGAAGGTGTTGAATCTCATTAGAGACTTTGAATTGCAAAAGATGAAGGAATCTGCAACTATAAAAGAGTACTCTAAGATGCTTTTGAACATAGCTAACAAAGTAAGATTGCTTGGTTCTGAATTTAAGGACTCTCATATTGTTGAAAAAATTCTGGTTACCGTACCTGACAGATTTGAAGCTACCATAACCATCTTAGAAAACTCTAAGGATTTTTCCAAGATCACTCTTGGAGAGCTTCTCAATGCTTTACAGGCATAG 4155 0.4255 MLSRAEAGKKSGGGSNAPKKLLKDFETMNKALYLDKGSARSSIPGANSRSKFTGKSQLPDPKSKSKTSVNNNNDDGVQKDKKSIWNWRPLRALSHIRNKRFNCSFYLQVHLIEGLPPSFDNASLAVYWKRRDGVLVTGPAKVIQSVAEFEEKLTYTCSVYGSRSGPHHSAKYEAKHFLLYASLLSAQEMDLGKHRVDLTRLLPLTLEELEEEKSSGKWTTSFRLSGVAKGAVMNVSFGYTVVGDNAGTARDSHNASNVLSSRQNSFALMKQDVKPRQFDGSSRTRRTTSLQLSPRASDEVKDLHEVLPLTRSALASSIDILYKKFDEEKASSMLSEAELDSFSENLGSIKPDAYASDFGKETFDEHVSKAEEKCPMHEEPEFSVFQEKLEIFKPDDNPLPDSANENPEQFQGNDFFVVDKGIELSSNEPVIREEFIGKAPEDASTVDTAYTLGISGTQESFEESVKHDFLDEVNDISKDQVVVEEFASKEDGFDSDTNELLLQELESALNSVSNLERVALESPKTAEFKSEHKMTKSHSLDDVTESVASEFLSMLDLERSPMALNSESEPESPRELLLRQFEKEALDGDFSSLFDFEMNHDNEADGGYDGSAASEQWNFSEDVRSSSLLQDLQEEHLAESQDVRSKQRAQILEDLETEALMRQWGLNEEAFHHSPPKDFTGFGSPIPLPPEEPPILPPLDDGLGPFLQTKDGGFLRSMNPSLFKNSKSGGSLIMQVSNPVVVPAEMGSGIMEVLQCLASVGIEKLSMQAKELMPLEDITGKTMQQVAWEAMPVLEGAERQSHLQHNPITRQDGPHVQRDLKGMPSVQKSGKFSSRTVANQPGSEFVSVEDLAPLAMDKIEALSMEGLRIQSGMSEDEAPSNIIAQSIGDISALQGKGVDISGSLGLDGAAGLQLMDVKDGSDLGDGVDGIMGLSLTLDEWMRLDSGEIDDIDNISEHTSKLLAAHHANSFDFIRGSSKGEKRRGKSRRCGLLGNNFTVALMVQLRDPLRNYEPVGTPMLALIQVEREFMLPKQKIFNSVSLMMKNNDEDDDDREILAKVDMKDTKSEENTSEEEEGIPQFRITEVHVAGLKPEPQKTKLWGTSNQQQSGSRWLLANGMGKNNNNKLPLMKSKGSSKSNAPVTSKVQPGDSLWSISSRLFGNRGKSHEPVLRALFGFVIVASTKLDSSFNNCKGPVRETESMEGDSKFSTIAPSFFDGENYQIWTVRMEAYLEALDLWETVEEDIKNHKDRKIRNAKAKACLFAAVSPTIFTRIMSLKSAKAIWDYLKEEYDGDDQIKGMKVLNLIRDFELQKMKESATIKEYSKMLLNIANKVRLLGSEFKDSHIVEKILVTVPDRFEATITILENSKDFSKITLGELLNALQA 1384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00438 1384 MobiDBLite consensus disorder prediction 1 21 - -
Vimu10g00438 1384 Pfam gag-polypeptide of LTR copia-type 1251 1382 - -
Vimu10g00438 1384 MobiDBLite consensus disorder prediction 273 295 - -
Vimu10g00438 1384 ProSiteProfiles C2 NT-type domain profile. 93 241 IPR019448 -
Vimu10g00438 1384 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1 1 1168 IPR039614 -
Vimu10g00438 1384 MobiDBLite consensus disorder prediction 38 80 - -
Vimu10g00438 1384 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 98 243 IPR019448 -
Vimu10g00438 1384 Coils Coil 498 518 - -
Vimu10g00438 1384 Pfam Domain of unknown function (DUF4219) 1215 1241 IPR025314 -
Vimu10g00438 1384 MobiDBLite consensus disorder prediction 41 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00438 Vimu-Chr10 3278443 3284306 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00438 - - gmx:100815106 1720.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00438 10 3278443 3284306 Vimu10g00438 10 3278443 3284306 ECH
Vimu7g01469 7 13938096 13941594 Vimu10g00438 10 3278443 3284306 PCT