Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00407 ATGTCCAACAACAACGAAAACATCACCATGACCGATCTCACTTCTGCCCTCAACGAAGACAATCGCGCCGATCTAGTCAGTGCTCTCAAGAGTAAGATACAGAGTCTGGCTGGACAGCATTCGGATGTTCTCGAGACTTTATCGCCTAACGTCAGGAAGCGTGTTGAATCTCTTAGAGAGATTCAGGGTAAACATGATGAACTAGAGGCAGAATTCTTCAAGGAGAGAGAAGCTCTTGAAGCTAAGTACCAAAAGTTGTATCAGCCGTTCTACACAAAGCGCTATGAAATAGTAAATGGTGTTACTGAAGTGGAAGGAGCAGCAGTTGAAACAACCGATGGATCAGAAGAGGATAATGAGAAAGGAGTACCTTCTTTTTGGCTCAATGCAATGAAAAATAATGATGTGTTGGCTGAAGAGATTTCAGAGCGTGATGAAGCTGCTCTCAAGTTTCTAAAAGACATTAAGTGGATCCGGATAGATAACCCTAAAGGGTTCAAGCTTGAGTTCTTTTTTGATACCAATCCGTTCTTTTCAAACTCTGTCTTGACTAAAACATATCATATGATTGATGAGGATGAACCTATATTGGAGAAAGCAATTGGGACGGAAATTGAATGGTACCCGGGAAAATGCTTGACTCAGAAGGTGTTGAAGAAAAAGCCCAAGAAAGGTTCAAAGAATGCTAAGCCAATTACCAAAACTGAAAACTGTGAAAGCTTCTTCAATTTTTTCAAACCACCAGAAGTTCCTGAAGATGATGATGACATTGATGAAGATTTGGCCGAGGAACTTCAGAATCAAATGGAACAAGATTATGACATTGGGTCAACTATAAGGGACAAAATTATCCCTCATGCTGTATCTTGGTTTACTGGGGAGGCTGTTCAGGGAGATGAGTTTGAAGACCTGGAGGATGATGAGGATGAAGATGACGATGAGGAGGATGAGGAAGAGGATGAGGATGAAGATGATGATGACGATGAAGAAGAGGAGGAAGACAGCAAGACTAAAAAGAAGAAGAGTGGAAGGGCACAGATTGGTGATGGTCAGCAGGGTGAGCGACCTCCAGAGTGCAAGCAGCAGTAA 1089 0.4224 MSNNNENITMTDLTSALNEDNRADLVSALKSKIQSLAGQHSDVLETLSPNVRKRVESLREIQGKHDELEAEFFKEREALEAKYQKLYQPFYTKRYEIVNGVTEVEGAAVETTDGSEEDNEKGVPSFWLNAMKNNDVLAEEISERDEAALKFLKDIKWIRIDNPKGFKLEFFFDTNPFFSNSVLTKTYHMIDEDEPILEKAIGTEIEWYPGKCLTQKVLKKKPKKGSKNAKPITKTENCESFFNFFKPPEVPEDDDDIDEDLAEELQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAVQGDEFEDLEDDEDEDDDEEDEEEDEDEDDDDDEEEEEDSKTKKKKSGRAQIGDGQQGERPPECKQQ 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00407 362 SUPERFAMILY NAP-like 30 293 IPR037231 -
Vimu10g00407 362 MobiDBLite consensus disorder prediction 298 332 - -
Vimu10g00407 362 Pfam Nucleosome assembly protein (NAP) 53 294 IPR002164 GO:0005634|GO:0006334
Vimu10g00407 362 FunFam Nucleosome assembly protein11 118 294 - -
Vimu10g00407 362 Gene3D Nucleosome assembly protein 118 294 - -
Vimu10g00407 362 Gene3D - 45 104 - -
Vimu10g00407 362 MobiDBLite consensus disorder prediction 293 362 - -
Vimu10g00407 362 FunFam Nucleosome assembly protein 1-like 1 45 103 - -
Vimu10g00407 362 Coils Coil 301 321 - -
Vimu10g00407 362 PANTHER TESTIS-SPECIFIC Y-ENCODED PROTEIN 33 316 IPR002164 GO:0005634|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00407 Vimu-Chr10 3081113 3083939 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00407 K11279 - gmx:100783783 542.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00407 10 3081113 3083939 Vimu10g00407 10 3081113 3083939 ECH
Vimu7g01444 7 13741065 13743451 Vimu10g00407 10 3081113 3083939 PCT