Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00349 ATGGTGCAGGTTAAGATGAAAGAGGAAAAAGAGAGGAAAATTGTACTCACAAAGCCATTAACAATAGACAGTGAATCTAATTCAGACTCGTATAAAGCCCCTAATCTTATGCAACGAATGCTCAGTTTATTCAAGAATGTACGCCCCGGTTCTGACCTCACACGCTTTCAGCTGCCACCACTATTCAACTTACCGAAGTCACAACTTCAGTGCTATGGTGAATCTGTGTATTGCACAGGTTCAGACTTGCTAAGCATGTGCAACAATGGAGAGAGTCCAATTGACAGGTTCATATCTGTTGTAGCATGGACCATATCTACCACTCGCCCTGTGACTTTTGGGGTTGCTCCTTATAATCCAATTCTTGGTGAGACACACCATGTTTCAAAGGGAAATCTTAATGTGTTACTGGAGCAGATTTCACATCACCCTCCAGTAGCTGCTCTCCATGCAACTGATGACAAGGAAAACATTGAAATGATATGGTGCCAGCGACCTGATCCAAAGTTTAATGGGACATCAGTTGAAGCTAAAGTGCATGGTATTCGGCAGCTGAAGCTACTCAATCATGGTGAAACATATGAAACGAATTGCCCTCACCTTTTACTTAGAATTTTTCCAGTTACTTCGGCTGATTGGTCTGGCACAGTTACCATCCGGTGCCAAGAGACAGGCATAGTGGCTGAGTTATCCTACAGATCAAATAGTTCCTTTCTAGGAATTGGAGGGAATCATAGAGTGATCAAAGGAAAGATCCTTGACTCTTCATCATTAAAAGTTTTGTATGAAGTTGATGGTCATTGGGATAGGGTTGTAAAATTGAAGGATACAAATAATAAGGAAGTAAGAGTAATATATGATGCAAAGGAAGTTCTGTCAGGTCTAGAAACTCCAAAGCTCAAGGATTCGGAGAGTGTGTGGCCAACTGAATCAGCTCATGTTTGGGGAGAACTGAGTGAAGCCATATTGAGGAAGGACTGGGAGAAAGCAAGAGAAGCAAAGCTAGAAATTGAGGAAAGACAAAGGAAGCTCTTGAAAGAAAGAGAGTCAAAAGGAGAAACATGGGTTTCTAAGCATTTTGTAGTATCTAACAACAAAGAAGGGTGGGAATGTTCACCTATTCAAAACACTGTACCAGCTGCCCCCATCACAGCACAATAA 1161 0.4169 MVQVKMKEEKERKIVLTKPLTIDSESNSDSYKAPNLMQRMLSLFKNVRPGSDLTRFQLPPLFNLPKSQLQCYGESVYCTGSDLLSMCNNGESPIDRFISVVAWTISTTRPVTFGVAPYNPILGETHHVSKGNLNVLLEQISHHPPVAALHATDDKENIEMIWCQRPDPKFNGTSVEAKVHGIRQLKLLNHGETYETNCPHLLLRIFPVTSADWSGTVTIRCQETGIVAELSYRSNSSFLGIGGNHRVIKGKILDSSSLKVLYEVDGHWDRVVKLKDTNNKEVRVIYDAKEVLSGLETPKLKDSESVWPTESAHVWGELSEAILRKDWEKAREAKLEIEERQRKLLKERESKGETWVSKHFVVSNNKEGWECSPIQNTVPAAPITAQ 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00349 386 FunFam Oxysterol-binding protein-related protein 4C 121 299 - -
Vimu10g00349 386 Gene3D - 122 296 - -
Vimu10g00349 386 Coils Coil 330 350 - -
Vimu10g00349 386 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 39 370 IPR000648 GO:0008289
Vimu10g00349 386 Pfam Oxysterol-binding protein 43 370 IPR000648 GO:0008289
Vimu10g00349 386 Gene3D - 307 381 - -
Vimu10g00349 386 SUPERFAMILY Oxysterol-binding protein-like 39 372 IPR037239 -
Vimu10g00349 386 ProSitePatterns Oxysterol-binding protein family signature. 138 148 IPR018494 -
Vimu10g00349 386 FunFam Oxysterol-binding protein-related protein 4B 307 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00349 Vimu-Chr10 2441067 2444770 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00349 K22285 - gmx:100813724 681.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00349 10 2441067 2444770 Vimu10g00349 10 2441067 2444770 ECH
Vimu7g01368 7 13093036 13101316 Vimu10g00349 10 2441067 2444770 PCT