Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00223 ATGAGTTATTTTCCTATCCCTGGCGGTGTTCTGATATCTCCTCTACACGAAAGTGTGCTCAACCTGATAAAAAATGATAATAAAGCTAATGGAGACAGCAGGTTTTCGTACCCTCTTAATGGTCATCAAGATCCTCTTAATGAACCAGATTCTTTTGTGCGGGCTGGACATTTGAAGAAGAACACAGTGAGAATGGTGAGACAAAGTGAAAAGCAGTTGGAATTGAAGCATCCGAATGGTACCCTTTCTGAGAAGGAACCTACATTGCATAAAAAGAAAAAATTAGGAAATAGAACACCGGATTGTAAAGATTTCCTGCCTAATGAATTGAAATGGACACCTCTTTCAAGCTCAATTTGTGATGCTGGTGAATTTGCTGAAGTCACTGCTAAAGCTTCTAAAGCCTCGAAGGAGGTTAATGAGAATGGGGTGCTGGGCAGAATGGTTTCTGAAGAAGCATTGAAGGAAGAGTCATTAGAATCGATATCTGGTCAAGATTTTGGGAAGACTGTGAAACAAACTGTAGGAAATGGTTTTCTGAAAAAGGCTCCAGAACATAAACTGGAAAGTTCCCACAAGGATAATTCTACAGACCCTATGAATAATAACTCTAGTAATACTTCCATTATTTCCAATAAGGTTGAACGTGAGGCACTAAAATGTAAGGCAGATCATAAGTCTGAGACCCATCAGAAAATAAAGGCTGTGTCTGAGCGAAAGAATAAGTCGAAAGGTGATCAGAGTCCTGGAAAAGCTAAGGCAGTTGCAAGAAAAAAAAGCTTTGGTGGTACTAATAATGCAATGGTAATTGAGAAAGGGAGTACTGGCTTTGACAGTACTTGTATAAATAAAATGAAGTCAAGGTCTCTGATGGACAAAAATTTCAGTGATAGTAACAGGGATTCAATGAAAGAAAAAAGATCAGAACGGAAAGTTGACAGTCTTGCTGGAAATGGTGAAATAAAAAATACAAAAATTAGTAATGGAAAACAGAGTGCATTTGGGATTAAAGCAAAAGAGAGAATGAGTGGCCATAAAGTTGTCAAGCAGGTGCTAGCTGGGCCATGCATTAATGATACTTCGGCTTCGTGTCCTATAGCTGAAAACAACGTTGCACCTGAGATGATTTCATCAGCAGTAACTGTACCTCAACTTATTGAAGAAGATTGGGTATGTTGTGATAGTTGCCAGAAATGGCGGCTCCTACCTACTGGTATGAAGCCTGAGCACCTTCCAGAGAAATGGCTGTGTAGCATGCTAAATTGGCTGCCTGGCATGAATTCTTGTGAGTTCAGTGAGGATGAGACAACAAAAGCACTTTATGCGTTATATCAAATGCCGATTTCCCAGGTTCAAAATAACATGCAAAGCCATGGCACTGAAACTGCGATTGGAGTTAGCTCTCCAAATTCTTTACAATATGGCCTAAATCAAAATATGTCTAGTTCTGATATGTCTGATCGAGGAAGGAAGAAACTTGTTATTAAGGAAAAGACAATGTCTGGAATTAATAATGACATGCATCGGTTCTCAAATTCAGTGAAGGCCAATGTTCAAGTATCTGGAAAAAACAGAAGCTTGAACGGCTTGAATCAGCATCCTGCTGACTTAAACCCAGTGAAGAAGATGGCAAACTCTTCTAAACATCTTAGTAGGCCTGACAACATGATAGAAGAGAAACATGTGCCTAAAGAGAATGAAAAGCAAGTGAATGGAGGTGATAGAAAGCATGTTAAGTTGAAACGGAAGGTGGATGCTGATCAATATAAATCGGGACATCCGAAGAAATTAAAAACTGAAAATATTTTCTCTGCTAATATTCAATCAAATTCTGACATGGACCTTGAGAAGGTGTCTCTATATTCAAGAAATGGTTTGCCAACAAAAGCTAGTGGGAAGGATATGAGAAAGTATGACGAATATTGTTTATCTGAGGATGCCTCTGACAGATTACCAGTCACTGTAAAGAAAGAGGGAGATAAAGCTCAGGTCTCATCTGGTTTAATGAAGAAAAGGAAATTGAAGGACCGGCTTGATGATGAAAAGCAGTATGGTGAAGAGGGTGATGCAACAGAATTTGGCAAAGAAAAGAAGTACAGAATTTTGAAGTCAGTAAATGAAGGCGACAATAAATTAAGCAAGGGTGGTATAAGGGAAGTTTGCAGGGCAGGCAATGGGGACAGTATGGCTGTTGGCACAGAAGTCAGACTTGGTGACAAACGCAACCAACTCAGGAAGCATAGGAAAAATGTTGCATCTCTTCATGCTTCAGATGGTATTGATCAAGTGCGCAAGGATTTGGACTGTAGAGAACATTCATTGGCAGCAACTTCAAGCTCTTCTAAAGTTTCAGGTTCTCATAAAGCTAAAATGAAGCTTGAAGATGTGAGAAGTTCACCTGTTGAATCTGTTACCTCGTCACCTTTGAGGGCCTTCAACTTGGATAAGAATAATTTTGCAGTAGGCGACACTTCAGTGAAAAACAATGTTACAAAAGGTGGACAGTCTGCGGTAGGTTCCAAGAGAAGTGTGGATAACAGGGACAGAAAACTATCAGTAAAATTGAAGGAGGGTAGAATTCCGCATGATTTACATACTACATCCCACAAATTATCTTCCACAGAGAACCAGGTTGAGGATGCTAAAGACACATGCAGGCTCCAAACTAAAAAACCTTCTGAACTAAAGAATAATCATTTGCTTGAAGGTGGTGTTCATGTTGAACAATCTGGCTATTGTGCCAATGGTGTACATAAAGAGGAGAAAGTAAAGAAGGAAAACCTGGAAAGTGAACTTTCCTGGCAGAAATCTGGTAAGGTTACATCATTGAACAGCAAGGAGAAAGGCAAAAAAATTTCTTCTCATGTTTGTACCGATAACATAAAGACATCAGGTTCAGAGACTGTTCATTCAAAAAAAGGTGGGAGGCATGATTCAGCAGCTGATCCCAGTAACCATGCATCTGATGCTGAGACAAAAAATGTTGTTAAATATACTTTACCCAAGTCTAAGAGTGAAATTGAGATTATTAGTCAGAAAAGTGCTTTAATACAAGGGCCAAATGAAACTGGAAAGCAAACTGAGATAAAACCAAGAGACTTTGAGAAATCAGCTCCAGAGATTGATGATCAACGTAGCAATGAGAGAAAGGATATCTCCCGGCAAAACTCAACTCACGATTTTGAGGAAGAAAACAAAGCTAATCATGTAATCACAGAATCAAGAGTTGGGAAATCGAAAGTTCTCTCATCTGCAGCAGGTGAACTTAAAAGGGAAGCATTGAATATGGGTTCTAGAACTGTACCTCAGTATCAAAAGGGAGGAATGGCTAATGAGCATCCTGTCAATGTTTCTGACAATGGTGATTTGGTCAAGTCAATGAGGAATTTTGCTGATATTAGTAACAATGCTGGAGTTAATTGTAGCTCTGGAAATTCCCTGCCTGATCAGCAACCCACTGTTTCAAGTCCTCTGAGAACAAATTTTAACCAAACTACTGTTGACACCCTGGAAGAAGCCGCAAAACTAAAAGATAGAGCAGATAATTATAAGAACTCTGGGTTTGACTTTGAAAGCAATGAGACATACTTTCAAGCTGGGTTGAAGTTTTTGCATGGAGCATCTATTTTAGAAAATTGTCACAATGACAGTAACAAACTTGGGGAAATGAGTCAAATGCAAATTTATGGTACTGCGGCCAAACTTTTCAAGTAA 3714 0.3915 MSYFPIPGGVLISPLHESVLNLIKNDNKANGDSRFSYPLNGHQDPLNEPDSFVRAGHLKKNTVRMVRQSEKQLELKHPNGTLSEKEPTLHKKKKLGNRTPDCKDFLPNELKWTPLSSSICDAGEFAEVTAKASKASKEVNENGVLGRMVSEEALKEESLESISGQDFGKTVKQTVGNGFLKKAPEHKLESSHKDNSTDPMNNNSSNTSIISNKVEREALKCKADHKSETHQKIKAVSERKNKSKGDQSPGKAKAVARKKSFGGTNNAMVIEKGSTGFDSTCINKMKSRSLMDKNFSDSNRDSMKEKRSERKVDSLAGNGEIKNTKISNGKQSAFGIKAKERMSGHKVVKQVLAGPCINDTSASCPIAENNVAPEMISSAVTVPQLIEEDWVCCDSCQKWRLLPTGMKPEHLPEKWLCSMLNWLPGMNSCEFSEDETTKALYALYQMPISQVQNNMQSHGTETAIGVSSPNSLQYGLNQNMSSSDMSDRGRKKLVIKEKTMSGINNDMHRFSNSVKANVQVSGKNRSLNGLNQHPADLNPVKKMANSSKHLSRPDNMIEEKHVPKENEKQVNGGDRKHVKLKRKVDADQYKSGHPKKLKTENIFSANIQSNSDMDLEKVSLYSRNGLPTKASGKDMRKYDEYCLSEDASDRLPVTVKKEGDKAQVSSGLMKKRKLKDRLDDEKQYGEEGDATEFGKEKKYRILKSVNEGDNKLSKGGIREVCRAGNGDSMAVGTEVRLGDKRNQLRKHRKNVASLHASDGIDQVRKDLDCREHSLAATSSSSKVSGSHKAKMKLEDVRSSPVESVTSSPLRAFNLDKNNFAVGDTSVKNNVTKGGQSAVGSKRSVDNRDRKLSVKLKEGRIPHDLHTTSHKLSSTENQVEDAKDTCRLQTKKPSELKNNHLLEGGVHVEQSGYCANGVHKEEKVKKENLESELSWQKSGKVTSLNSKEKGKKISSHVCTDNIKTSGSETVHSKKGGRHDSAADPSNHASDAETKNVVKYTLPKSKSEIEIISQKSALIQGPNETGKQTEIKPRDFEKSAPEIDDQRSNERKDISRQNSTHDFEEENKANHVITESRVGKSKVLSSAAGELKREALNMGSRTVPQYQKGGMANEHPVNVSDNGDLVKSMRNFADISNNAGVNCSSGNSLPDQQPTVSSPLRTNFNQTTVDTLEEAAKLKDRADNYKNSGFDFESNETYFQAGLKFLHGASILENCHNDSNKLGEMSQMQIYGTAAKLFK 1237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00223 1237 MobiDBLite consensus disorder prediction 292 324 - -
Vimu10g00223 1237 MobiDBLite consensus disorder prediction 825 841 - -
Vimu10g00223 1237 MobiDBLite consensus disorder prediction 825 846 - -
Vimu10g00223 1237 PANTHER CW-TYPE ZINC FINGER 1 1236 - -
Vimu10g00223 1237 MobiDBLite consensus disorder prediction 180 257 - -
Vimu10g00223 1237 MobiDBLite consensus disorder prediction 1026 1070 - -
Vimu10g00223 1237 ProSiteProfiles Zinc finger CW-type profile. 384 437 IPR011124 GO:0008270
Vimu10g00223 1237 Pfam CW-type Zinc Finger 390 435 IPR011124 GO:0008270
Vimu10g00223 1237 MobiDBLite consensus disorder prediction 1015 1070 - -
Vimu10g00223 1237 MobiDBLite consensus disorder prediction 215 253 - -
Vimu10g00223 1237 MobiDBLite consensus disorder prediction 195 213 - -
Vimu10g00223 1237 Gene3D - 384 439 - -
Vimu10g00223 1237 MobiDBLite consensus disorder prediction 292 316 - -
Vimu10g00223 1237 MobiDBLite consensus disorder prediction 969 984 - -
Vimu10g00223 1237 MobiDBLite consensus disorder prediction 777 799 - -
Vimu10g00223 1237 MobiDBLite consensus disorder prediction 924 995 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00223 Vimu-Chr10 1350071 1359483 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00223 - - vra:106762170 2347.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01831 7 16653228 16660978 Vimu10g00223 10 1350071 1359483 PCT