Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03524 ATGGTTACTCGACGCTTCACTCAACCACCAACCAGCGACGACGAAGACGACGATTCACCTCCTACCAAGCCACACTCCACTTCAACAAACTTCGTCGGCGATAACGCTTCCAACCACCGCAAAAGGAAGGTGCTGAACCTTCAAGACGAAGACGACGACGAAGAGGAAGAAGAAGCGTCAAACGTGAACGAGAAAAAGATGAAGTTGAATGATGATGATGATGATGATGATGTTGAGGAGGAAGATGAAGCGTCTGGTGAAGAAGATGAAGCGCCATTGGAGGATGCTAAACCTGTTGGTGGACCGGTTAGGGTTTCCGGAAAAGGAAGGGGCAGAAAGAGTCATTTTCAGTCGTTTGAATTCGACGATAACCTATACTCACTCGAGGATCCTGTGCTTCTTGTGCCTGAGGGTAAAGACCAAAAACCATATGTGGCGATTATCAAGGAGATTACACAATCCCTAGATGGCAGCTTGAAGATCACAGGGCAGTGGTTTTACCGGCCAGATGAAGCAGCCAAAAAGGGAGGAGGTAACTGGCAATCTAGTGACACCAGAGAGCTGTTTTACAGTTTCCACCGGGATGAGGTTCCAGCGGAATCCGTTATGCATAGGTGTGTGGTGCATTTCGTTCCCATACACAAACAGCTTCCAAATCGTAAGGAGCATCCTGGGTTTATTGTGCAAAAGGTTTATGACACAGTAGAACAGAAGTTGTGGAAGCTTACTGATAAAGACTACGAGGACAGTAAGCAAGAAGAAATTGATGAGCTTGTTCAGAAAACTTTTCAATGTTTGGGTGAGCTACCTGACATTGAGACTGATGAAGCTCCTGCTGCTCAGGAAGATTTGATTAGAGATGAAAGAACCTTCAAGAAACGGAGTATTTCACCTCTTGATATTTCAAGAGAGGACAGAATATCTCGAAAGAGAGTCCAACCTCCGAAACCTGAAACACCAAGGACTTGTTTAGCTAATACCTCAGAAGAGCATTATCGTATATTAGTGAATTTTAATGCATTAACAGGTGATACCTATCGTGACAAAGGTTTGGTGAAGTTGCTTCAAAATGTTCAATACTTGTTTGATACTGATGAAATCAGAAAGAAAAAAGACACATGCAGCGACAGTTCTGATGCAATCAACAATGGCGGCGCCAACAAAAGTTTAGAAATAGAAAAAGAGTGTAAAGACAAAGTTCTGAAGAATTCCAAGTCTTTTATCTGGCCAGATGTTGCTGTTCCAGCTGTAGTTGCTCTAGAGAATGCTTCACATGAAGCATTTCCATCAGATTATCAGAAGTACAGCCAAAAACTACGACAATTAGCATTTAATCTCAAGAGCAATGCATTTCTGTTATGCCGTCTATTAAATGGAGAGCTTGAACCTTCAAAAATATTGATTATGACACCTACTGAATTGAAGGAGGGTTTGACTACTGATGAAATATCCAAGGATGAACCTGAGAAGCCACAACACATGCAGATGACGGATACCCGCTGCACACGTTGCTCAGAGCAGAAGGTGGGCGTGAAGGATATTATCCGTGCAGGACATGTTGACCGATATATGCTGGAATGTATCGAATGTGGTCATTCCTGGTCTGCCTCTCACGATGCGGTGTCCATGCTGACGTTAGATGCATCAGATTCAAAAAGAAATGTAGGCACAGCCCCATGGGTCACTGCGAAATTTGAAAAGAAGCTGGTGAGTCCCCGTGAAAATGACAAGTCGAGCAATGACATCTTTATGCCGGAAGCCCATAAATCATTTGGCAAGTCCAGGAAAGATGAAAACAGATGA 1803 0.4354 MVTRRFTQPPTSDDEDDDSPPTKPHSTSTNFVGDNASNHRKRKVLNLQDEDDDEEEEEASNVNEKKMKLNDDDDDDDVEEEDEASGEEDEAPLEDAKPVGGPVRVSGKGRGRKSHFQSFEFDDNLYSLEDPVLLVPEGKDQKPYVAIIKEITQSLDGSLKITGQWFYRPDEAAKKGGGNWQSSDTRELFYSFHRDEVPAESVMHRCVVHFVPIHKQLPNRKEHPGFIVQKVYDTVEQKLWKLTDKDYEDSKQEEIDELVQKTFQCLGELPDIETDEAPAAQEDLIRDERTFKKRSISPLDISREDRISRKRVQPPKPETPRTCLANTSEEHYRILVNFNALTGDTYRDKGLVKLLQNVQYLFDTDEIRKKKDTCSDSSDAINNGGANKSLEIEKECKDKVLKNSKSFIWPDVAVPAVVALENASHEAFPSDYQKYSQKLRQLAFNLKSNAFLLCRLLNGELEPSKILIMTPTELKEGLTTDEISKDEPEKPQHMQMTDTRCTRCSEQKVGVKDIIRAGHVDRYMLECIECGHSWSASHDAVSMLTLDASDSKRNVGTAPWVTAKFEKKLVSPRENDKSSNDIFMPEAHKSFGKSRKDENR 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03524 600 Gene3D - 336 476 IPR036575 GO:0006351
Vifa6g03524 600 PANTHER BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN 11 598 - -
Vifa6g03524 600 MobiDBLite consensus disorder prediction 570 600 - -
Vifa6g03524 600 MobiDBLite consensus disorder prediction 1 113 - -
Vifa6g03524 600 ProSiteProfiles BAH domain profile. 124 243 IPR001025 GO:0003682
Vifa6g03524 600 SMART mid_6 379 484 IPR003618 GO:0006351
Vifa6g03524 600 Coils Coil 52 72 - -
Vifa6g03524 600 ProSiteProfiles TFIIS central domain profile. 346 502 IPR003618 GO:0006351
Vifa6g03524 600 SUPERFAMILY Elongation factor TFIIS domain 2 411 475 IPR036575 GO:0006351
Vifa6g03524 600 MobiDBLite consensus disorder prediction 303 323 - -
Vifa6g03524 600 SMART BAH_4 124 243 IPR001025 GO:0003682
Vifa6g03524 600 CDD BAH_plant_3 106 252 - -
Vifa6g03524 600 Gene3D - 25 232 IPR043151 -
Vifa6g03524 600 MobiDBLite consensus disorder prediction 73 90 - -
Vifa6g03524 600 Pfam BAH domain 125 241 IPR001025 GO:0003682
Vifa6g03524 600 Pfam Transcription factor S-II (TFIIS), central domain 342 489 IPR003618 GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03524 Vifa-Chr6 1159741347 1159745665 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03524 - - cam:101501082 843.188
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g03524 6 1159741347 1159745665 Vifa6g03524 6 1159741347 1159745665 ECH
Vifa1g07928 1 1238439355 1238443268 Vifa6g03524 6 1159741347 1159745665 PCT