Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07928 ATGGTGAACCGCCGATTCACTCAGGTAGACACCAGCGACGACGACGACGACGAAGCTCCACCACCACCACCACCACCATCTCAGCAACATTCCAAGCTACGCAAACGGAAGAGAATGAAGCTTCTAGACGAAGAAGAAGAAGACAACGAAAATAGCGACAACAATAACGACATCGAAGAGGAAAAGGAAGAAGAGAAAAAGGATCCGCCTCAGACTCCAGATGATGCTAAACCTATTGGTGATCCTCTTAGGGTTTCGGGAAAAGGAAGAGGGAGGAAGAGACATTACGAGTCCTTCGAATTCGATGGCAATCAATACTATCTCGAGGATCCTGTTCTCCTTGTGCCTGAGGATAAAGAACAAAAGCCCTATGTTGCTATAATTAAAGATATTATACAGTACTTTAGTGGCAGTATAATGGTGGCGGGACAGTGGTTTTATCGTCCTGAAGAAGCTGAAAAGAAAGGCGGTGGCAGCTGGAAATCGTGTGATACTAGGGAGCTTTTTTACAGTTTCCATCGGGATGAGGTTCCTGCAGAGTCTGTTATGCATAAGTGTGTGGTGCACTTTGTTCCCTTAAACAAACAGTTTCCGAAACGTAAGCAACATCCTGGTTTTATTGTACAAAAGGTGTATGACACTTTGGAAAGGAAACTCTGGAAGCTGACTGATAAGGACTTTGAGGATGTTAAACAGCAAGAAATTGATGAGCTTGTTCAAAAAACCCAGAAACGCATCGGCGAGCTACTTGACATTGAGCCTGAAGAAGCCCCTCCTGCTGATCTGGAGGAGGTGATGAAAAATAAAAGAAGCTCAAGGAGAAAGAGCATTTCACCCATTGATGTTTCAAGGGAGGAGGAAGGAATTTCAAAGGGTGACCAACATTCAAAGCCTGAAACACCAATGAGTTGTGTAAGTAATAACTCGGAGCACCATCGCATATTAGTGAATTTCAATGCACTGACTGGAAACATTCATCGTGACAAATGGTTGGAGAGGCTGCTTCAACACGTTCAGTACATGTGTAATTATGATGAGGGCGTAGAAAAAGGGAAGGTATCAGGAAATGCCGATTCTGATGAAATCAAAAACAAAAACAATGATAAAACTTCAGAAATAGCAAATGACTGTCAGGACAAGGGTCAGAAGAGTTCCGAGTCTTTTGTGTGGCCAGATGCTGCTGTTTCAGCCATAGTTGCTCTTGAGAAAGCTTCCAATGAGGCCCTTTCAGATTTTCAGAAGTACAACCAAAAGCTACGGCAATTGGATTTTAATCTCAAGAACAATGCATTGCTAGCACGCCGTCTGCTAAATGGAGAGTTGGAACCTTCTAAAATTTTGAATATGACACCCACTGAATTAAAGGAGGGTTTGACTGCTGAGGAATTAACCAAGAAGGAGCCTGATGAGAAACAACACATGCAAATGACAGATGCCAGCTGCTCAAGATGCATGGAGTTTAAAGTGGGCTTGAGGGAGATTATCCATGCTGGACACGATGACCGTTATCAGCTGGAATGTGTTGCCTGTGGTAATTCCTGGTATGCCTCCCGGGATGAAGTGTCTAGACTGACCATAGATGCATCGGACTCAAAGAAAAGCACAGGCACAGCACCATCGACTACAGCAAAATTTGAAGGTGTTCAGAAGAAGCTGGCGAGCCCCCGTGAATCTGAAAATACAGCTGATGACATCTCTAAGAAAACAGGTGAACCACATGCGCCTGTTTTGGACACCCAGAAATCATTTGGCAAGTCTAAGAAAGATGACAACATTGAGGCCAAAAAACATGTTGATAAGGAATGA 1806 0.4374 MVNRRFTQVDTSDDDDDEAPPPPPPPSQQHSKLRKRKRMKLLDEEEEDNENSDNNNDIEEEKEEEKKDPPQTPDDAKPIGDPLRVSGKGRGRKRHYESFEFDGNQYYLEDPVLLVPEDKEQKPYVAIIKDIIQYFSGSIMVAGQWFYRPEEAEKKGGGSWKSCDTRELFYSFHRDEVPAESVMHKCVVHFVPLNKQFPKRKQHPGFIVQKVYDTLERKLWKLTDKDFEDVKQQEIDELVQKTQKRIGELLDIEPEEAPPADLEEVMKNKRSSRRKSISPIDVSREEEGISKGDQHSKPETPMSCVSNNSEHHRILVNFNALTGNIHRDKWLERLLQHVQYMCNYDEGVEKGKVSGNADSDEIKNKNNDKTSEIANDCQDKGQKSSESFVWPDAAVSAIVALEKASNEALSDFQKYNQKLRQLDFNLKNNALLARRLLNGELEPSKILNMTPTELKEGLTAEELTKKEPDEKQHMQMTDASCSRCMEFKVGLREIIHAGHDDRYQLECVACGNSWYASRDEVSRLTIDASDSKKSTGTAPSTTAKFEGVQKKLASPRESENTADDISKKTGEPHAPVLDTQKSFGKSKKDDNIEAKKHVDKE 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07928 601 SMART BAH_4 104 223 IPR001025 GO:0003682
Vifa1g07928 601 MobiDBLite consensus disorder prediction 528 601 - -
Vifa1g07928 601 MobiDBLite consensus disorder prediction 353 383 - -
Vifa1g07928 601 Gene3D - 348 456 IPR036575 GO:0006351
Vifa1g07928 601 PANTHER BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN 1 594 - -
Vifa1g07928 601 Pfam BAH domain 105 221 IPR001025 GO:0003682
Vifa1g07928 601 MobiDBLite consensus disorder prediction 528 544 - -
Vifa1g07928 601 MobiDBLite consensus disorder prediction 253 306 - -
Vifa1g07928 601 SUPERFAMILY Elongation factor TFIIS domain 2 325 455 IPR036575 GO:0006351
Vifa1g07928 601 ProSiteProfiles TFIIS central domain profile. 373 482 IPR003618 GO:0006351
Vifa1g07928 601 Gene3D - 25 207 IPR043151 -
Vifa1g07928 601 Pfam Transcription factor S-II (TFIIS), central domain 322 472 IPR003618 GO:0006351
Vifa1g07928 601 Coils Coil 42 64 - -
Vifa1g07928 601 MobiDBLite consensus disorder prediction 582 601 - -
Vifa1g07928 601 MobiDBLite consensus disorder prediction 550 571 - -
Vifa1g07928 601 ProSiteProfiles BAH domain profile. 104 223 IPR001025 GO:0003682
Vifa1g07928 601 SMART mid_6 360 464 IPR003618 GO:0006351
Vifa1g07928 601 MobiDBLite consensus disorder prediction 260 294 - -
Vifa1g07928 601 MobiDBLite consensus disorder prediction 1 92 - -
Vifa1g07928 601 Coils Coil 591 601 - -
Vifa1g07928 601 MobiDBLite consensus disorder prediction 60 74 - -
Vifa1g07928 601 CDD BAH_plant_3 86 232 - -
Vifa1g07928 601 MobiDBLite consensus disorder prediction 353 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07928 Vifa-Chr1 1238439355 1238443268 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07928 - - cam:101495294 948.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07928 1 1238439355 1238443268 Vifa6g03524 6 1159741347 1159745665 PCT