Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03490 ATGTTCAGATGGAGGAGTGAGAAAAACAGGGTCAAAGCTGTTTTCAAACTCCATTTCCATGTCACTCAGGTGCTGCAGTCTGGTCTGCTTGATTCTTTGGTACTTTCTATAGTGCCGGGAGATATTGGAAAACCTACTACGAGATTAGAGAAAGCTGTAATAAACAATGGAGTTTGTAAATGGGAGAATCCTGTTTATGAAACTGTTAAGTTTATTCGTGACCCGAAGAACGGTAGATTCGGTGAAAGAGTTTATTATTTTGTGATTTCGACGGGTTTATCAAAAGCTAGTACTTTTGGAGATGTTTCTGTTGATTTTGCTGATTATGCAGAAGCTACCAAGATTTCGAATGTTTCTCTTCCCATCAAGAATTCTCATTCTGATGCTGTCTTGCATGTATCGATTCAGAGACTACAAGAGAATAATGATAAAAGAGAGGAAGAGGAATGTGAAGATACGAAATTAAAACCGAATGATAAGAGTTTAAGAACTTATTTGAGCAATGGAGATGAGGTTTCACGCACTAAAAGTGATTCTTCTGAAATTTCACAGGATGTGTCTGGCAATGGAAACTCAGAAAGAGCTGGATTGAGTGCTGATTGTAGGACATCTAGTGGATCTGACATTACATTGTCGAGTTCTGACGGAAGCTCTGGACTTGATACTCCCCGAGAACTTGGACTAAGAAATACCAGCATCCGTCCTGCAAAAATTGGTGTTCCTTCAGTCACTAGCCACATTTCAGAGGCTCAAAAACCTGCAGTAAATGCTTTATCATCAATGTATGATGTACATCAGAGATCATCACACTTCCGAGACTCTTCAGGCGGGTCAGAACATGGTCTCAGTACGGAAGGTTCAATACATGGCTCTCATGATGCCCTTCCTAGGGAAAGATCCCATCAGGCATCAGATGTAGAGAATGAAAAGCTCAAGGCTGAAGTTGCTGTTTTGGCAAGGCAGGTGGATGTGTCAGACATGGAACTTCAAACTCTTCGGAAACAAATTGTAAAGGAAAGTAAAAGAGGGCAGGAACTTACAAAGGAAGTTATCAGCTTGAAAGAGGAAAGAGATACACTCAAGATAGAATGCGAAAACTTCAAGTCTTTTCGCAAACGAAGGGACGATGCCAAAGTGAGTAGCATGTCACTAATGGAAAGCGGGGATCTTCATACACTTGTTGAAGAAATCAGACAGGAATTGAATCATGAGAAGGACATGAATGCGAATCTCAGACTACAGTTAAATAAGACACAGGAATCAAATGCTGAACTAGTTCTCGCTGTTCAGGATCTCGATGCAATGTTGGAGCAGAAAAATAACGAAATACTTAGTCTTTCCAATAATTACAAACAGACTAAAAACTCCCATGGTTTTGGGAGAAACGTCTCTAATTGTGAAACAGACGACGATGAACAAAAAGAATTGGACGAGCTTGTTAAGAATCAGGACAATCCCAAGGAGACACACTTACTTGAGAAAAAAATCACGGATCTCTATGGTGAAATAGAGATGTATAGGAGAGACAAAGACGAGTTAGAGATGCAGATGGAGCAGCTTGCACTGGACTATGAAATTTTGAAACAGGAAAACCATGACATCGCATATAAGCTGGAACAAAGCGAACTGCAAGAACAGTTAAAACTACAGTATGAATGCTCTCCTCCTCCTGGCATAGACGAATTTGAAATGCATATCCAGAAACTGGAAAATCAACTCAAGAAACAGTCAGAAGAATTCTCAAATTCTTTGGAAACCATCAAGTCTCTTGAGAACCAAATTCAACGATTAGAGGAGGAACTGGAGAAACAAGCCCAAGGATTTGAATCTGATTTAGATTCAGTGACACATGACAAAGTTGAGCAAGAGCAAAGAGCCATTCGAGCAGAGGAAGCTTTGCGATGCACTAGACTTAAAAATGCTAATACTGCAGAGAGGCTTCAAGACGAATTTAGAAAGCTATCAATGCAAATGGCCACGACGTTTGAAGCAAATGAGACAGCTACCATGAGAGCGCTTACAGAAGCAAGTGAGCTTCGCATGCAGAAAAAACTACTGGAGGAAATGCTGCGTAAAGTCAAACAAGAGCTTCAGTCAGTCAAAGCTGATTATGAAGTAAAACTGAATGAACTTTCCAACAAAATAGATACCATGACAATTCAGATGCAACAGATGTTGCTGGAAATTGATGACAAGTCCATGCAACTTGAAAATCAGAAAAAGCACGAGGAACTTGTTGGCAATGATTTCTCCGAGGCGATCCAATTGCTAAAAGCTGAAAATGAAAAGCTTACAGTGGAAATCTCATGCTTATCTGAGCAAGTAAAACAAAAAGAAGTCTCAAGTTCTGACTTGGAACTTATGAAGAAATCACTCGAGGAATATGAGACCCTCTTAAATACTCAAAAGGAAGAGAGAAACGAGCTTGTGAGTACAATTGCTCTGTTGAAGAAGGAAGCAGAACAGTCACTTTATGAGCTAAATAGGACGGGGCATCTCAAAGACGAAGAAGAGAAAGCGGGTAAACTCTTGCATTCAGAGTTAGATGCTCTTAAAGCTCAATACAGTGACCTGCAGCGTTCTCTTTTTGATGATGAGACTGAGAAAGAAATACTAAGAAAGCAAATTTTCCATCTTAACGGTGAACTGAAGAAGAAGGACGATGCATTAACCAAAAAAAGTACTTCACTTTCTCAGAACTCAAAAGAAATGACTAATCTGAAAGAGAAAATTAAAAGGCTCGAGGACCAGATAAAGTCAAAGGAGATTGCCTTGAAAACATCAGCTTCTTCACTTTTGGAGAAGGAAAGAGAGCTTCAATCCAAAATTGAGGAACTGGAGGACAAAGTTGATGAACTCAATCAGCGCATCAAGGTTGCTGCGGATAAGAGTTTTACTACTACAAATGACAGATCTGAAGAAGTAAGAAATTCAATTGAGCATCTCAGTGATACTTCATGCGCCTTGGACGAAAATGGGGCTGTAATGTCATCACTCAAGAGTCACGCACATTTGTCTGAGAAAGAAGCTGAAATACCAGCAGTTGATAATAGCGGTGATAACCGACTTAGTGATGTTTTAAGTGAATTATCATCATTGAAAGAAAGAAACAACTCAACGAAAACCGAACTAAAAGAGTTGCAAGAAAGATACTCAGAAATGAGTCTGAAATTCGCCGAGGTAGAAGGTGAAAGACAAAAGCTTGTCATGACAGTAAGAAGCCTCAAGAATGCTAGGAAGGGCTAA 3246 0.3977 MFRWRSEKNRVKAVFKLHFHVTQVLQSGLLDSLVLSIVPGDIGKPTTRLEKAVINNGVCKWENPVYETVKFIRDPKNGRFGERVYYFVISTGLSKASTFGDVSVDFADYAEATKISNVSLPIKNSHSDAVLHVSIQRLQENNDKREEEECEDTKLKPNDKSLRTYLSNGDEVSRTKSDSSEISQDVSGNGNSERAGLSADCRTSSGSDITLSSSDGSSGLDTPRELGLRNTSIRPAKIGVPSVTSHISEAQKPAVNALSSMYDVHQRSSHFRDSSGGSEHGLSTEGSIHGSHDALPRERSHQASDVENEKLKAEVAVLARQVDVSDMELQTLRKQIVKESKRGQELTKEVISLKEERDTLKIECENFKSFRKRRDDAKVSSMSLMESGDLHTLVEEIRQELNHEKDMNANLRLQLNKTQESNAELVLAVQDLDAMLEQKNNEILSLSNNYKQTKNSHGFGRNVSNCETDDDEQKELDELVKNQDNPKETHLLEKKITDLYGEIEMYRRDKDELEMQMEQLALDYEILKQENHDIAYKLEQSELQEQLKLQYECSPPPGIDEFEMHIQKLENQLKKQSEEFSNSLETIKSLENQIQRLEEELEKQAQGFESDLDSVTHDKVEQEQRAIRAEEALRCTRLKNANTAERLQDEFRKLSMQMATTFEANETATMRALTEASELRMQKKLLEEMLRKVKQELQSVKADYEVKLNELSNKIDTMTIQMQQMLLEIDDKSMQLENQKKHEELVGNDFSEAIQLLKAENEKLTVEISCLSEQVKQKEVSSSDLELMKKSLEEYETLLNTQKEERNELVSTIALLKKEAEQSLYELNRTGHLKDEEEKAGKLLHSELDALKAQYSDLQRSLFDDETEKEILRKQIFHLNGELKKKDDALTKKSTSLSQNSKEMTNLKEKIKRLEDQIKSKEIALKTSASSLLEKERELQSKIEELEDKVDELNQRIKVAADKSFTTTNDRSEEVRNSIEHLSDTSCALDENGAVMSSLKSHAHLSEKEAEIPAVDNSGDNRLSDVLSELSSLKERNNSTKTELKELQERYSEMSLKFAEVEGERQKLVMTVRSLKNARKG 1081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03490 1081 Coils Coil 559 618 - -
Vifa6g03490 1081 Coils Coil 897 924 - -
Vifa6g03490 1081 Coils Coil 329 363 - -
Vifa6g03490 1081 Coils Coil 676 728 - -
Vifa6g03490 1081 Gene3D - 487 620 - -
Vifa6g03490 1081 MobiDBLite consensus disorder prediction 138 233 - -
Vifa6g03490 1081 Coils Coil 929 963 - -
Vifa6g03490 1081 MobiDBLite consensus disorder prediction 138 159 - -
Vifa6g03490 1081 Coils Coil 394 456 - -
Vifa6g03490 1081 ProSiteProfiles C2 NT-type domain profile. 3 139 IPR019448 -
Vifa6g03490 1081 MobiDBLite consensus disorder prediction 160 220 - -
Vifa6g03490 1081 PANTHER MYOSIN HEAVY CHAIN-RELATED PROTEIN 1 1080 - -
Vifa6g03490 1081 Coils Coil 496 530 - -
Vifa6g03490 1081 MobiDBLite consensus disorder prediction 267 307 - -
Vifa6g03490 1081 MobiDBLite consensus disorder prediction 291 307 - -
Vifa6g03490 1081 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 8 144 IPR019448 -
Vifa6g03490 1081 Coils Coil 785 819 - -
Vifa6g03490 1081 Coils Coil 754 774 - -
Vifa6g03490 1081 Coils Coil 1023 1064 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03490 Vifa-Chr6 1149647283 1149651669 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03490 - - gmx:100819574 1437.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g03490 6 1149647283 1149651669 Vifa6g03490 6 1149647283 1149651669 ECH
Vifa1g07893 1 1231740568 1231744727 Vifa6g03490 6 1149647283 1149651669 PCT