Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07893 ATGTTTCGTTCTGCAAAATGGAAGACTGAGAAAAACAGAATTAAAGCTGTTTTCAAACTTCAATTCAATGCCTCTAAGGTGTTACAATCTGGAGTAGATGCATTGGTGTTATCAATAATTCCTGGTGACATTGGAAGGCCAACTAAGAGATTAGAGAAAGCTACGGTTCGAGATGGAAATTGTCGGTGGGAGAATCCGGTATTCGAAACTGTCAAGTATTTTCAGGATCCTAAAACCGGGAAAATCGCCGATAAAATATATCGTTTTTTGCTATCGACGGGGTTATCAAAAGCTAGCGCGATCGGAGAGGTTTCGATGAACTTTGCTGATTATGTAGATGCCACGAAGCCCTCTTCGGTTTCTCTTCCCATCAGGATTCCACATTGTGATGCTGTTTTGCATGTATCTGTCCAAAGGATTCAAGAAAACAGTGATCAAAGAGAGAAAGATGAATGTGATGATAATGCCAAACAAAAATTCGATGATAGGAGCTTAAGGAACCAATTAAACAACGGCGATACAGATGAAAGTACTAAGAGTTATTTTTCTGAAGACGTTTCTGCCAAAGCAATCATCGATAGGACGTCTAGTGGATCTGACATTACATTGTCGACGAGCTCTGATGACAGCTCTGGAGTTGATACTCCCTGTGACTGTGACAATGGACTGAGAAAGACAAACATTAACGCCACCACAAATCAGTTTGTTCCAGTTATGCACCGTGCCGCAGAATCTCCAAGTCGTGCTGTCAATACCTCGACAACGACGCATGATTTACAACAAAGATCACAATGGGGTTGGTCCTCTAGCTCAGAGCTCGGGTTAAGTATGGGCGATTCAACAAATGGTTCTCATAACGTCCTTTCAAAGGAAACGTCACTAGATGCGTCTCATTCGGAGATTGAGAGACTCAAGGCTGAACTGGCTGCTATGGCGAGGCATGTGGATGTGTCGGACATGGAACTACAGACTCTTAGGAAGCAAATTGTAAAGGAAAGCAAAAGAGGGCAGGATCTCTCGAAGGAAATCATTATCTTGAAAGATGAAAGAGATGGACTCAAGACGGAATGTGACTATATTAGGTCTTTCCATAAACGCATGGATGACGCTAAAGTGAGAAACAGGTCACAGTTGGAAAGTGGAGATGTTCATGCTTTTGTCGAGGAAATTAGACAAGAATTGAATTATGAGAAAGACACGAACGCAAATCTCCGATTACAGTTAAAAAAGATGCAAGAATCAAATGCTGAATTGGTTCTTGCTGTGCAGGACCTGGAAGAAATGTTGGAGCAGAAAAATATGGATACGTGTAGTCACTCCAATAAACACGAGCCGTGCAAAAATTCACAAGATTTAAGGAGGAATCTCTCAAAGTGTGAAACAGATGATGATGAAGATCAGAAAGCATTAGACGAGCTTGTTAAGGAGAACGGCGATGCCAAGGAGACACAATTGCTTGAGAAAAAAATTATAGACTTGTATGGTGAAATTGAAATGTATAGGAGAGACAAAGAGGAGTTAGAGATGCAGATAGAGCAGATTGCACTAGACTATGAAATATTAAAACAGGAAAACCACGGCATTGCGAGTAAGCTAGAGCAAAGCCAGCTGCAAGAACAGTTAAACATGCAATGTGATTGTTCATCTCCTCCTGCTGCTATGAATGACATTGAAAATCACATTGAGAATCTGGAAAAAGAACTCAAGGAACAGTCGGAAGATTTCTCAAATTCTCTAGCTACCATTAAGGTACTAGAAACCCATATCAGAAGATTAGAAGAGGAAATGGAGAAACAAACACAGGGATTTGAGGCTGATATAGAAGCGGTGGCACGCGAAAAAGTTGAGCAAGAGCAAAGAGCCATTCAAGCTGAGGAAACTTTGCGAAAGACCAGACTAAAAAATGCTAATACTGCTGAGAGGCTTCAAGAGGAATTCCAAAGGCTCTCATTGCAAATGACATCTTCTTTTGATGAAAATGAGAAGGCTACCATGAGAGCACTGACAGAAGCGAGTGAATTGCGTCTACAGAAAAGTCTAGTGGAAGGAATGCTGCTTAAAGTCCAAGAAGAGCTTGAGTCAACTAAAGCTGATTACGAGGTAAAAATGGGCAACCTTTCAAACCAAATGGATACAATGACAGTTCAGATACAACAAATGTTAGTGGAAATTGAAGACAAGTCCAAGAAGCTCGAAAATCAGAAGAAGCTTGGGGAACAAGTTAATAGGGATTTCACTGAGGAGTTCGAGATGCTAAAATCTGAGAATGGAAAACTCAAAGTGGAAATAATGCAGATGTTGATGGAAATTGAAGACAAGTCCAAGCAGCTTGAAAATCAGAAGAAGCTTGGGGAACAAGTTAATTGGGATTTCTCTAAGGAGATCGAGATGCTTAAAGCCGAGAATGAAAATCTTACAACAGATATTTTACGCTTAAATGAACAAGTAGGAGGAAAAGAAATCTTGAGAACTGAATTGGAACTTATGAAGAAATCTATTGAGGAATATGAAATACTGTTACGTCAAGGAACCGTGGAAAGAAATGAACTTGTGAGTACAGTTGCATTATTGAAGAAGGAAGTGGAACAATCACTTAACGAGCTAAGTAGGATGAGAAATCTCAAGGATGAAAAAGAAGAAGAGGCTAGACTCTTGAAGTCAGAGTTGGAAGCTATTAGATCTCAATGCAGTGATTTGAAACAATCACTTTCTGAGGATGAGGCTGAGAAAGAAAAACTAAGAAAGCAAATTTCTCAGCTAAAGAACGAAATAAAGAAGAAGGGTGATGCATTAACAAGTTTCGAGAAGAGGTTCAGGGATAGTAATGGCCGCAACCAACATTCTGATGGAGCTAAAACCATTCAAATCATCAAAAGAACTACTTCCAGTCCTCAGAATTCAAAGGAAATGGCAAGTCTCAGGGAGAAAATAAAAATGCTTGAGGGACTAATAAAATCAAAGGAAACTGCGTTGGAAACTTCAACACTTTCATCTTTGAAGAAGGAAACGGAACTCCATAGTAGAATTGCTGAGCTTGAGAACAACGTGGAGGAATTGAATCGGAATGTTACTTTACACGAGGAAAGAAGTATTACAAATTCAAATGAGATATCAGACGAATTAAGAAATAGATTGGAAGATGCAGACAACAATCTTAGTAACGCGTTGGCTGAATTGTCGTCATTGAAGGAAAGAAACAAATTAATGGAAAATGAACTCAAAGAGATGCAAGAGAGATACTCAGAAATGAGTCTCAAATTTGCTGAGGTAGAAGGTGAAAGACAAATTCTTGTTATGACTGTAAGAAACCTCAAGAGTTTCCACAAGGGCTGA 3333 0.3963 MFRSAKWKTEKNRIKAVFKLQFNASKVLQSGVDALVLSIIPGDIGRPTKRLEKATVRDGNCRWENPVFETVKYFQDPKTGKIADKIYRFLLSTGLSKASAIGEVSMNFADYVDATKPSSVSLPIRIPHCDAVLHVSVQRIQENSDQREKDECDDNAKQKFDDRSLRNQLNNGDTDESTKSYFSEDVSAKAIIDRTSSGSDITLSTSSDDSSGVDTPCDCDNGLRKTNINATTNQFVPVMHRAAESPSRAVNTSTTTHDLQQRSQWGWSSSSELGLSMGDSTNGSHNVLSKETSLDASHSEIERLKAELAAMARHVDVSDMELQTLRKQIVKESKRGQDLSKEIIILKDERDGLKTECDYIRSFHKRMDDAKVRNRSQLESGDVHAFVEEIRQELNYEKDTNANLRLQLKKMQESNAELVLAVQDLEEMLEQKNMDTCSHSNKHEPCKNSQDLRRNLSKCETDDDEDQKALDELVKENGDAKETQLLEKKIIDLYGEIEMYRRDKEELEMQIEQIALDYEILKQENHGIASKLEQSQLQEQLNMQCDCSSPPAAMNDIENHIENLEKELKEQSEDFSNSLATIKVLETHIRRLEEEMEKQTQGFEADIEAVAREKVEQEQRAIQAEETLRKTRLKNANTAERLQEEFQRLSLQMTSSFDENEKATMRALTEASELRLQKSLVEGMLLKVQEELESTKADYEVKMGNLSNQMDTMTVQIQQMLVEIEDKSKKLENQKKLGEQVNRDFTEEFEMLKSENGKLKVEIMQMLMEIEDKSKQLENQKKLGEQVNWDFSKEIEMLKAENENLTTDILRLNEQVGGKEILRTELELMKKSIEEYEILLRQGTVERNELVSTVALLKKEVEQSLNELSRMRNLKDEKEEEARLLKSELEAIRSQCSDLKQSLSEDEAEKEKLRKQISQLKNEIKKKGDALTSFEKRFRDSNGRNQHSDGAKTIQIIKRTTSSPQNSKEMASLREKIKMLEGLIKSKETALETSTLSSLKKETELHSRIAELENNVEELNRNVTLHEERSITNSNEISDELRNRLEDADNNLSNALAELSSLKERNKLMENELKEMQERYSEMSLKFAEVEGERQILVMTVRNLKSFHKG 1110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07893 1110 Coils Coil 847 937 - -
Vifa1g07893 1110 Coils Coil 490 524 - -
Vifa1g07893 1110 Coils Coil 607 634 - -
Vifa1g07893 1110 Coils Coil 294 314 - -
Vifa1g07893 1110 MobiDBLite consensus disorder prediction 246 294 - -
Vifa1g07893 1110 MobiDBLite consensus disorder prediction 141 169 - -
Vifa1g07893 1110 Coils Coil 760 787 - -
Vifa1g07893 1110 MobiDBLite consensus disorder prediction 947 969 - -
Vifa1g07893 1110 Coils Coil 970 990 - -
Vifa1g07893 1110 Coils Coil 554 602 - -
Vifa1g07893 1110 Coils Coil 387 435 - -
Vifa1g07893 1110 Coils Coil 689 709 - -
Vifa1g07893 1110 Coils Coil 1031 1093 - -
Vifa1g07893 1110 Coils Coil 1002 1029 - -
Vifa1g07893 1110 Coils Coil 819 839 - -
Vifa1g07893 1110 Coils Coil 714 741 - -
Vifa1g07893 1110 PANTHER MYOSIN HEAVY CHAIN-RELATED PROTEIN 1050 1106 - -
Vifa1g07893 1110 MobiDBLite consensus disorder prediction 934 969 - -
Vifa1g07893 1110 MobiDBLite consensus disorder prediction 141 180 - -
Vifa1g07893 1110 Coils Coil 795 815 - -
Vifa1g07893 1110 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 11 145 IPR019448 -
Vifa1g07893 1110 ProSiteProfiles C2 NT-type domain profile. 6 141 IPR019448 -
Vifa1g07893 1110 MobiDBLite consensus disorder prediction 243 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07893 Vifa-Chr1 1231740568 1231744727 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07893 - - cam:101499947 1434.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07893 1 1231740568 1231744727 Vifa6g03490 6 1149647283 1149651669 PCT