Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07880 ATGGCGTTACAAGGAAAGCTAGATAGATTCAAAAAGCAGCAGGAGAAATGTCAAACAACGCTATCGAGCATAGCAGCTACCAAGACTGCGTCTGCATCGATGCCGAGTTCTCTTGTTCCTGTCAAATTTTCAACTGATACGGAGAGGCTTCAGCATATTAACAGTATACGTAAAGCTCCCGTTGGAGCTCAGATGAAACGTGTTATTGATCTCCTTTATGAGACTCGGCAGGCTCTAACATTGGATCAAATAAATGAAACATGCCATGTGGACATGAGAGCTAACAAAGATGTTTTTGACAATATGAGGAAAAATCCAAAAGTAAGATATGATGGAGAAAGATTCTCTTATAAGTCGAAACATGCCCTTCAGGACAAAAAAGAGCTGCTTTTCCTAATACGCAAATTTCCAGAGGGAATTGCTGTTATTGACTTGAAGGATTCATACCCAACTGTGATGGAGGACTTGCAGGGTTTGAAAGCTGGCAGGGAGATTTGGCTGCTGTCCAACTTTGATTCTCAGGAAGACATTGCCTACCCTAATGATCCTAAAGTGCCCATTAAGGTGGATGATGACCTAAAACAGGTTTTTCGTGGGATTGAATTACCCCGTGATATGATTGATATAGAGAGGGATCTCCAAAAAAATGGAATGAAACCTGCTACTAACACTGCAAAGAGGAGGAGTGCAGCACAAATGGAAGGCATTCCATCCAAGCCTAAACCTAAGAAGAAGAAGAATGAAATCACCAAGAGGACCAAGCTGACTAATGCCCATCTTCCAGAGCTTTTTCAGAACTTAAAGAACTGA 810 0.416 MALQGKLDRFKKQQEKCQTTLSSIAATKTASASMPSSLVPVKFSTDTERLQHINSIRKAPVGAQMKRVIDLLYETRQALTLDQINETCHVDMRANKDVFDNMRKNPKVRYDGERFSYKSKHALQDKKELLFLIRKFPEGIAVIDLKDSYPTVMEDLQGLKAGREIWLLSNFDSQEDIAYPNDPKVPIKVDDDLKQVFRGIELPRDMIDIERDLQKNGMKPATNTAKRRSAAQMEGIPSKPKPKKKKNEITKRTKLTNAHLPELFQNLKN 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07880 269 Pfam TFA2 Winged helix domain 2 125 181 IPR040501 -
Vifa1g07880 269 PANTHER TRANSCRIPTION INITIATION FACTOR IIE, BETA SUBUNIT 1 268 IPR016656 GO:0005673|GO:0006367
Vifa1g07880 269 MobiDBLite consensus disorder prediction 219 269 - -
Vifa1g07880 269 ProSiteProfiles TFIIE beta central core DNA-binding domain profile. 49 124 IPR003166 GO:0006367
Vifa1g07880 269 Pfam TFIIE beta subunit core domain 63 122 IPR003166 GO:0006367
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07880 Vifa-Chr1 1229846244 1229849340 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07880 K03137 - gmx:100788089 418.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07880 1 1229846244 1229849340 Vifa6g03475 6 1146540923 1146543502 PCT