Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03473 ATGTCTCGCATGAAAATATCATTGCTGTCTATGTTCACTCTTTGCTTGATATCTGCACATGCAGCAAGGTTTGAAATTATCAACCGATGCTCCTACACCGTGTGGCCAGCTGCCATTCCCAGAGGTGGTGGTAGGCAGTTGAATTCAGGTCAATCATATGCCTTAGACATCCCTGCTGGAACCTCGGGCCGAATTTGGGGCCGAACCGGTTGCAACTTCGATGGATCAGGCCGTGGTAATTGTCAAACCGGTGACTGTGGTGGTGCCCTAAGTTGCAGCGTATCTGGTAGGCCTCCGACCACACTTGCTGAATTTACCCTTAACGGTGGAAACAATCAGGATTACTATGATTTATCTGTGATTGATGGTTTCAACATTGCAATGCAAATTGCTCCAACCTCTAATGGATGCAACAAAGTGCGAACTTGCAGACAACGTTCTTGCCCTGATGCTTATCAGTATCCGAGTGATAATACTAAAACAGTTTCATGCCCAGGTGGTACCAACTATAGAATTGTCTTCTGCCCTTAA 531 0.4614 MSRMKISLLSMFTLCLISAHAARFEIINRCSYTVWPAAIPRGGGRQLNSGQSYALDIPAGTSGRIWGRTGCNFDGSGRGNCQTGDCGGALSCSVSGRPPTTLAEFTLNGGNNQDYYDLSVIDGFNIAMQIAPTSNGCNKVRTCRQRSCPDAYQYPSDNTKTVSCPGGTNYRIVFCP 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03473 176 SUPERFAMILY Osmotin, thaumatin-like protein 22 176 IPR037176 -
Vifa6g03473 176 Gene3D Thaumatin 145 176 IPR037176 -
Vifa6g03473 176 SMART tha2 24 176 IPR001938 -
Vifa6g03473 176 Pfam Thaumatin family 28 144 IPR001938 -
Vifa6g03473 176 Gene3D Thaumatin 21 144 IPR037176 -
Vifa6g03473 176 PANTHER OS03G0233200 PROTEIN 145 176 IPR001938 -
Vifa6g03473 176 PIRSF PR5 138 176 IPR001938 -
Vifa6g03473 176 PIRSF PR5 1 146 IPR001938 -
Vifa6g03473 176 CDD TLP-P 24 176 - -
Vifa6g03473 176 PRINTS Pathogenesis-related protein signature 77 106 IPR001938 -
Vifa6g03473 176 PRINTS Pathogenesis-related protein signature 64 75 IPR001938 -
Vifa6g03473 176 PRINTS Pathogenesis-related protein signature 166 175 IPR001938 -
Vifa6g03473 176 PRINTS Pathogenesis-related protein signature 23 35 IPR001938 -
Vifa6g03473 176 PRINTS Pathogenesis-related protein signature 114 130 IPR001938 -
Vifa6g03473 176 PRINTS Pathogenesis-related protein signature 43 52 IPR001938 -
Vifa6g03473 176 ProSitePatterns Thaumatin family signature. 77 92 IPR017949 -
Vifa6g03473 176 ProSiteProfiles Thaumatin family profile. 21 176 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03473 Vifa-Chr6 1144997020 1144997550 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03473 7 148 Receptor kinase-like Gene Family AT5G38280 41.667 4.12e-30 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03473 - - psat:127102054 251.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g03473 6 1144997020 1144997550 Vifa6g03473 6 1144997020 1144997550 ECH
Vifa1g07879 1 1229641887 1229642612 Vifa6g03473 6 1144997020 1144997550 PCT