Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07879 ATGTCTTTCTTATCACTCCTCACATTCACACTATGCTCCCTACTCCTCACCTTCACTCCCTCACAAGCAGCCAACTTTGAGATAGTCAACAATTGCCCATACACCGTTTGGGCAGCTTCTAGCCCCGGCGGTGGCCGCCGTCTCGACCGCGGTCAAACATGGAACCTCTGGGTTAACCCTGGAACTGCCATGGCACGTATTTGGGGTCGCACCGGGTGTAACTTTGATGGCAGCGGTCGTGGCCGCTGCCAGACAGGTGACTGCACCGGTGGACTCCAGTGTACAGGCTGGGGTGTCCCACCAAACACATTGGCCGAATTCGCGCTAAACCAATACGGAAATCAAGATTTCTACGACATCTCACTCGTCGATGGATTCAACATCCCAATGGATTTCTTCCCTCTTAACGGCGGGTGTCATAAGATCAGTTGCACTGCCGATATCAACGGACAATGCCCTAATGAACTCAGGACACAAGGTGGTTGTAACAACCCTTGTACTGTTTATAAAACCAATGAATTTTGTTGTACTAATGGACAAGGAACATGTGGTCCCACTTATTTCTCAAGGTTTTTTAAGGATAGGTGTCATGATTCTTATAGTTACCCTCAAGATGATCCAACAAGTACTTTCACTTGTCCTGCTGGATCTAACTATAAAGTTGTTTTCTGTCCTCTTGGAGCTCCTCATATTGAGATGCCACTAAATCATACTAGTGTGTATTGA 726 0.4738 MSFLSLLTFTLCSLLLTFTPSQAANFEIVNNCPYTVWAASSPGGGRRLDRGQTWNLWVNPGTAMARIWGRTGCNFDGSGRGRCQTGDCTGGLQCTGWGVPPNTLAEFALNQYGNQDFYDISLVDGFNIPMDFFPLNGGCHKISCTADINGQCPNELRTQGGCNNPCTVYKTNEFCCTNGQGTCGPTYFSRFFKDRCHDSYSYPQDDPTSTFTCPAGSNYKVVFCPLGAPHIEMPLNHTSVY 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07879 241 FunFam Thaumatin I 24 225 - -
Vifa1g07879 241 Gene3D Thaumatin 23 226 IPR037176 -
Vifa1g07879 241 ProSiteProfiles Thaumatin family profile. 23 225 IPR001938 -
Vifa1g07879 241 PANTHER OS03G0233200 PROTEIN 12 225 IPR001938 -
Vifa1g07879 241 Pfam Thaumatin family 30 225 IPR001938 -
Vifa1g07879 241 ProSitePatterns Thaumatin family signature. 79 94 IPR017949 -
Vifa1g07879 241 PIRSF PR5 1 240 IPR001938 -
Vifa1g07879 241 SUPERFAMILY Osmotin, thaumatin-like protein 25 225 IPR037176 -
Vifa1g07879 241 SMART tha2 26 225 IPR001938 -
Vifa1g07879 241 PRINTS Pathogenesis-related protein signature 66 77 IPR001938 -
Vifa1g07879 241 PRINTS Pathogenesis-related protein signature 25 37 IPR001938 -
Vifa1g07879 241 PRINTS Pathogenesis-related protein signature 79 108 IPR001938 -
Vifa1g07879 241 PRINTS Pathogenesis-related protein signature 44 53 IPR001938 -
Vifa1g07879 241 PRINTS Pathogenesis-related protein signature 116 132 IPR001938 -
Vifa1g07879 241 PRINTS Pathogenesis-related protein signature 215 224 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07879 Vifa-Chr1 1229641887 1229642612 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07879 4 238 Receptor kinase-like Gene Family AT5G38280 35.000 2.84e-41 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07879 - - gmx:100240704 451.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07879 1 1229641887 1229642612 Vifa6g03473 6 1144997020 1144997550 PCT