Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03460 ATGTCTGTAATAAAAATATCAGTATTTTCTCTATTTAGTCTGTGCTTGATATCTGCACAGGCAGCGAGATTTGACATCGTTAACCAATGCTCATACACTGTCTGGCCAGCTGCCATCCCCAGCGGCGGCGGTAGGCAGTTAAACTCAGGCCAAACATGGAGTATAGACATCCCAGCTGGAACCTCAGCGGGAAGAGTTTGGGGCCGAACTGGTTGCAGTTTTGATGGCTCGGGTCGTGGTAGTTGTCAAACTGGTGACTGCGGTGGTGCCCTAAGTTGCAGCTTATCCGGTAAATCTCCAGTCACATATGCCGAATTTACCCTTAACGCTGGAAACAACCAGGATTACATTGATATATCTGTGATTGACGGATTCAACATTCCATTGCAATTTGCTCCAACCTCTAACGGATGCAACAAAGTGCTAACATGCCAACAATATTCATGCCCCGATGCTTATCAGTATCCCACTGATGGTACTAAACTAGTTTCATGCCCAGGTGGTACCAACTATAGAGTTGTCTTCTGCCCTTGA 534 0.4625 MSVIKISVFSLFSLCLISAQAARFDIVNQCSYTVWPAAIPSGGGRQLNSGQTWSIDIPAGTSAGRVWGRTGCSFDGSGRGSCQTGDCGGALSCSLSGKSPVTYAEFTLNAGNNQDYIDISVIDGFNIPLQFAPTSNGCNKVLTCQQYSCPDAYQYPTDGTKLVSCPGGTNYRVVFCP 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03460 177 ProSitePatterns Thaumatin family signature. 78 93 IPR017949 -
Vifa6g03460 177 Gene3D Thaumatin 22 146 IPR037176 -
Vifa6g03460 177 SUPERFAMILY Osmotin, thaumatin-like protein 22 177 IPR037176 -
Vifa6g03460 177 PANTHER OS03G0233200 PROTEIN 148 177 IPR001938 -
Vifa6g03460 177 Pfam Thaumatin family 28 141 IPR001938 -
Vifa6g03460 177 Gene3D Thaumatin 147 177 IPR037176 -
Vifa6g03460 177 ProSiteProfiles Thaumatin family profile. 21 177 IPR001938 -
Vifa6g03460 177 CDD TLP-P 24 177 - -
Vifa6g03460 177 PIRSF PR5 1 148 IPR001938 -
Vifa6g03460 177 PIRSF PR5 141 177 IPR001938 -
Vifa6g03460 177 SMART tha2 24 177 IPR001938 -
Vifa6g03460 177 PRINTS Pathogenesis-related protein signature 167 176 IPR001938 -
Vifa6g03460 177 PRINTS Pathogenesis-related protein signature 78 107 IPR001938 -
Vifa6g03460 177 PRINTS Pathogenesis-related protein signature 43 52 IPR001938 -
Vifa6g03460 177 PRINTS Pathogenesis-related protein signature 23 35 IPR001938 -
Vifa6g03460 177 PRINTS Pathogenesis-related protein signature 115 131 IPR001938 -
Vifa6g03460 177 PRINTS Pathogenesis-related protein signature 65 76 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03460 Vifa-Chr6 1141538337 1141538870 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03460 8 149 Receptor kinase-like Gene Family AT5G38280 40.523 3.26e-27 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03460 - - psat:127102054 251.906
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g03460 6 1141538337 1141538870 Vifa6g03460 6 1141538337 1141538870 ECH
Vifa1g07878 1 1229218245 1229218955 Vifa6g03460 6 1141538337 1141538870 PCT