Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07878 ATGGCCATCACCATGAAAACAAGCCTCTCCATCTTCCTTTTCATAGCCATAACCTCCATAGCCTCAACACAAGCAGCAAATTTCAACATCACAAACAAGTGCAACTACACCGTCTGGGCCGCCGCCGTACCCGGCGGCGGTGTAAGACTCAACACCGGCGAATCATGGAAGATGAACATAACAAACGGCACAAGCAACGCAAGAATATGGGGTCGAACCAATTGCACTTTCGACAACTTGGGTGTCGGAAAGTGCCAAACAGGTGATTGTAACAACACTCTCGAATGTAAAACAGTGGGTACACCACCAAACACAATCCTAGAATTGTCTTTGAACTTGTACAACAACCTCGATTTCTACGATATTTCGCTTGTACAAGGCTTCAACATCCCGATTAAGATGACACCTTCATCAAGCTCTTGTAGCATGGTTAATTGTACTACCAATATTAGCGATGAGTGTCCTAAAGCTCTTCAGGTACCAGGTGGATGTAACGATCCTTGTACAACGTTTGGAACAACTCAATATTGTTGTGACTTAAGTTCTGCTAAATCTGTTGCTACAAATGCTTCTGCCACGTGTGCTCCAACAACTTATTCCAAGTTCTTTAAGGATAGGTGTCCTTGTGCTTATAGTTACCCTAAAGATGATGCAACCAGCACTTATACTTGCTTGGGAGGAACTGCCTATAATGTTGAGTTTTGTCCTTAA 711 0.4346 MAITMKTSLSIFLFIAITSIASTQAANFNITNKCNYTVWAAAVPGGGVRLNTGESWKMNITNGTSNARIWGRTNCTFDNLGVGKCQTGDCNNTLECKTVGTPPNTILELSLNLYNNLDFYDISLVQGFNIPIKMTPSSSSCSMVNCTTNISDECPKALQVPGGCNDPCTTFGTTQYCCDLSSAKSVATNASATCAPTTYSKFFKDRCPCAYSYPKDDATSTYTCLGGTAYNVEFCP 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07878 236 SMART tha2 28 236 IPR001938 -
Vifa1g07878 236 PIRSF PR5 1 236 IPR001938 -
Vifa1g07878 236 FunFam Thaumatin I 26 236 - -
Vifa1g07878 236 PANTHER OS03G0233200 PROTEIN 12 236 IPR001938 -
Vifa1g07878 236 ProSiteProfiles Thaumatin family profile. 25 236 IPR001938 -
Vifa1g07878 236 SUPERFAMILY Osmotin, thaumatin-like protein 26 236 IPR037176 -
Vifa1g07878 236 Gene3D Thaumatin 25 236 IPR037176 -
Vifa1g07878 236 PRINTS Pathogenesis-related protein signature 27 39 IPR001938 -
Vifa1g07878 236 PRINTS Pathogenesis-related protein signature 226 235 IPR001938 -
Vifa1g07878 236 PRINTS Pathogenesis-related protein signature 81 110 IPR001938 -
Vifa1g07878 236 PRINTS Pathogenesis-related protein signature 118 134 IPR001938 -
Vifa1g07878 236 PRINTS Pathogenesis-related protein signature 68 79 IPR001938 -
Vifa1g07878 236 PRINTS Pathogenesis-related protein signature 46 55 IPR001938 -
Vifa1g07878 236 Pfam Thaumatin family 32 236 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07878 Vifa-Chr1 1229218245 1229218955 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07878 8 236 Receptor kinase-like Gene Family AT5G38280 36.111 3.70e-43 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07878 - - tpra:123909017 402.519
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07878 1 1229218245 1229218955 Vifa6g03460 6 1141538337 1141538870 PCT