Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01033 ATGGGTCGCCTTATTTCCTTTCTCATCGTTCTCACCTTCTTTACACTATCTTTCCTCTCAGAGGTACACTCAACATCGTTCAAGATTATAAACAAGTGCCGTCACACAATATGGCCAGGATTACTCTCAGGCGCCACCTCGCCGCCGCTACCCACCACCGGATTCACCCTCAAGAGCGGAGAGTCAAGGACTGTCAACATCCCGAAAGCTTGGTCGGGTCGGTTATGGGCAAGGACTCTCTGCAACCATGGCTCCGACGGGAGATTCTCGTGTGTCACCGCTGACTGTGGCTCTGGTAAAGTAGAGTGTGCTGGCGGTGGGGCTAAACCTCCTGCATCATTGGCGGAGTTCACCTTGAACGGAGCCGACGGGTTGGACTTCTACGACGTGAGTTTGGTCGACGGTTATAATCTTCCGATGCTGATCGTGGCTAAAGGTGGGACTAAAGGAGGCTGCAGTCCTACTGGATGTCTTCTTGATCTTAACGGAGGTTGTCCGGCAGATCTTAAGGTGGCGCGTGGTGATGGGAGTGGTGATAACGTTGCGTGTAGAAGCGCGTGTGAAGCTTTTGCGGATCCTCGTTATTGTTGTAGTGAAGCGTACTCTACGCCTGACACGTGTGCTCCTTCTGTATACTCGCAGTTTTTTAAGCATGCATGCCCACGCTCATATAGCTACGCGTATGATGATAAGACCAGCACATTCACGTGTGCCTCCGCTAACTATTTGATCGTGTTTTGTCCCTTACCCTATACAAGCCAAAAAGTGTTGGGAGCACGTCAAGACGGGGCACAGCTTCCTCTTGTAAACAAAACTATGATGTACTTAAAAAAACAACATTCTGGTGGTTGTTCATCAACCGGTCTAATTCGAACGCAGATTGTAGCTTATGTTGCATCTATCACTCTGGCATTTTTCCTGTCATGCTCTCATAATTAA 939 0.492 MGRLISFLIVLTFFTLSFLSEVHSTSFKIINKCRHTIWPGLLSGATSPPLPTTGFTLKSGESRTVNIPKAWSGRLWARTLCNHGSDGRFSCVTADCGSGKVECAGGGAKPPASLAEFTLNGADGLDFYDVSLVDGYNLPMLIVAKGGTKGGCSPTGCLLDLNGGCPADLKVARGDGSGDNVACRSACEAFADPRYCCSEAYSTPDTCAPSVYSQFFKHACPRSYSYAYDDKTSTFTCASANYLIVFCPLPYTSQKVLGARQDGAQLPLVNKTMMYLKKQHSGGCSSTGLIRTQIVAYVASITLAFFLSCSHN 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01033 312 CDD TLP-PA 26 247 - -
Vifa6g01033 312 ProSitePatterns Thaumatin family signature. 87 103 IPR017949 -
Vifa6g01033 312 ProSiteProfiles Thaumatin family profile. 24 248 IPR001938 -
Vifa6g01033 312 Gene3D Thaumatin 25 248 IPR037176 -
Vifa6g01033 312 FunFam THAUMATIN-LIKE PROTEIN 1 25 248 - -
Vifa6g01033 312 Pfam Thaumatin family 31 248 IPR001938 -
Vifa6g01033 312 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Vifa6g01033 312 PRINTS Pathogenesis-related protein signature 238 247 IPR001938 -
Vifa6g01033 312 PRINTS Pathogenesis-related protein signature 74 85 IPR001938 -
Vifa6g01033 312 PRINTS Pathogenesis-related protein signature 126 142 IPR001938 -
Vifa6g01033 312 SMART tha2 27 248 IPR001938 -
Vifa6g01033 312 SUPERFAMILY Osmotin, thaumatin-like protein 26 248 IPR037176 -
Vifa6g01033 312 PANTHER OS03G0233200 PROTEIN 13 248 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01033 Vifa-Chr6 340404738 340406354 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01033 7 248 Receptor kinase-like Gene Family AT5G38280 50.407 2.85e-85 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01033 - - ccaj:109798931 523.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g01033 6 340404738 340406354 Vifa6g01033 6 340404738 340406354 ECH
Vifa6g01033 6 340404738 340406354 Vifa4g02325 4 699154419 699155600 ECH