Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02325 ATGGAAGCTTCAACTCAATTTGCTATCACTCATCTCTTTTTGTTTCTTTTTTATTTAATAAGAGGTTTAGATTCAGCCACATTTACGATTGTAAACAAGTGTAGCTATCCCGTTTGGCCCGGGATTTTGTCCGGTGCTGGGACGGCACAGTTAACAACTACTGGTTTCGTCCTAGACTCGGGTGAAACCAGTGTTATAGCTGTGCCGACCGCTTGGTCAGGCCGAATATGGGGACGAACATTATGCTCAACAGACTCCACTGAAAAGTTCTCATGTGCTACCGGAGACTGCGGCTCCTCTAACATGGAATGCAGAGGCAGTGGAGCCATCCCACCGGCGACACTTGCAGAGTTCACGTTAAACGGTGCCGGAGGGATGGATTTCTACGACGTGAGTCTTGTAGACGGTTACAACCTTCCGATGACTATCGAACCGCGTGGTGGTTTCGGCGCGTGTGAGGCTTTTGGGGATCCGTTGTATTGTTGCAGTGGCGCTTATGCAACACCGCAGACATGTAGACCAAGTTCATACGCTCAGTATTTCAAGAACGCGTGCCCACGCGCTTATAGCTATGCTTATGATGATGGAACTAGCACATTCACTTGTTCTTCTGCGGATTATGTCATTACTTTCTGTTCTACACCTTCCAAAAGTAAGTTGATAAAGTCAGGAGGAAGTGGAAAATTGCCATTTGGAGTGGACATATGGGCAGGAAAGGGCAATGGACTGGGTGATGAATCAACAACCAAGGTGATGATGACATCAGTAATTGGCGCAGTTTTAGCGATAATTTTGTGA 798 0.4674 MEASTQFAITHLFLFLFYLIRGLDSATFTIVNKCSYPVWPGILSGAGTAQLTTTGFVLDSGETSVIAVPTAWSGRIWGRTLCSTDSTEKFSCATGDCGSSNMECRGSGAIPPATLAEFTLNGAGGMDFYDVSLVDGYNLPMTIEPRGGFGACEAFGDPLYCCSGAYATPQTCRPSSYAQYFKNACPRAYSYAYDDGTSTFTCSSADYVITFCSTPSKSKLIKSGGSGKLPFGVDIWAGKGNGLGDESTTKVMMTSVIGAVLAIIL 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02325 265 PIRSF PR5 148 241 IPR001938 -
Vifa4g02325 265 PIRSF PR5 1 156 IPR001938 -
Vifa4g02325 265 SUPERFAMILY Osmotin, thaumatin-like protein 26 212 IPR037176 -
Vifa4g02325 265 ProSiteProfiles Thaumatin family profile. 25 212 IPR001938 -
Vifa4g02325 265 PANTHER OS03G0233200 PROTEIN 151 212 IPR001938 -
Vifa4g02325 265 Pfam Thaumatin family 32 145 IPR001938 -
Vifa4g02325 265 Pfam Thaumatin family 151 212 IPR001938 -
Vifa4g02325 265 Gene3D Thaumatin 26 149 IPR037176 -
Vifa4g02325 265 Gene3D Thaumatin 150 213 IPR037176 -
Vifa4g02325 265 SMART tha2 28 213 IPR001938 -
Vifa4g02325 265 CDD TLP-PA 27 212 - -
Vifa4g02325 265 PRINTS Pathogenesis-related protein signature 127 143 IPR001938 -
Vifa4g02325 265 PRINTS Pathogenesis-related protein signature 203 212 IPR001938 -
Vifa4g02325 265 PRINTS Pathogenesis-related protein signature 27 39 IPR001938 -
Vifa4g02325 265 PRINTS Pathogenesis-related protein signature 75 86 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02325 Vifa-Chr4 699154419 699155600 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02325 7 218 Receptor kinase-like Gene Family AT5G38280 46.512 9.86e-70 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02325 - - gmx:100809419 353.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g02325 4 699154419 699155600 Vifa4g02325 4 699154419 699155600 ECH
Vifa6g01033 6 340404738 340406354 Vifa4g02325 4 699154419 699155600 ECH